ORF-translator

ORF-translator

Simple translation of open reading frames to amino acids. This tool is intended for transcripts (CDS). Download Perl script. Use Prodigal for gene prediction from prokaryotic genomes.

Toggle example input

>AB820299.1 Halorubrum kocurii rpoB gene for RNA polymerase subunit B, complete cds, strain: JCM 14978
ATGGCTCAGGCAGAACGCGAAGCGAAGGTGTACGTCAACGGGAGCCTCGTCGGGACCCATCCGGACCCCG
AGGCCCTCGCCGAACAGATCCGCGAGGCCCGCCGACGCGGCGACGTCTCGGAGATGGTGAACGTCTCGGT
CAAAGACCGGACCCAGGAAGTGATCGTCAACGCGGACGCGGGACGCGCCCGCCGCCCGCTGATCGTCGTC
GAGAACGGCGAGCCCCTGCTGGGCGACGAGGAGGTCGAGGCCGTCGAACGCGGCGAGGTCGAGTTCGAGG
ACCTGGTCGAGCGCGGCTACGTCGAGTTCATCGACGCCGAGGAGGAGGAGGACATCCTCGTCGCCGTCGA
CGAGGAGGACGTGACCGAGGACCACACGCACCTCGAGATCGACCCGCAGCTCGTGTTCGGTATCGGCGCG
GGGATGATCCCGTACCCCGAGCACAACGCGAGCCCCCGGATCACGATGGGCGCGGGGATGATGAAGCAGT
CGCTCGGGCTCCCCTCCGCCAACTACCGCATCCGACCGGACACGCGGCAGCACCTGCTGCACTACCCGCA
GCTGGCGATGGTGAAGACGCAGACGTCCGACCAGATCAGCTTCGACAAGCGGCCGGCGGCGCAGAACTTC
GTCGTCGCCGTGATGTCCTACGAGGGCTTCAACATCGAGGACGCGCTGGTGATGAACCAGGGCTCCGTCG
ACCGCGCGCTCACCCGCTCGCACTTCTTCCGGACCTACGAGGGCGAGGAGCGGCGCTACCCCGGCGGACA
GGAGGACCGCTTCGAGATCCCCGACCAGGACGTGCGCGGCGCCCGCGGCGAGGACGCGTACACCCACCTC
GACGAGGACGGCCTCGTCAACCCCGAGACGAAGGTGGACGAGTCCTCGGTCCTGCTCGGCAAGACCAGCC
CGCCGCGCTTCTTGGAGGAGCCCGACGACATGGGCGGGCTCTCCCCGCAGAAGCGCCGCGAGACGAGCGT
GACGATGCGCTCGGGCGAGTCCGGCGTCGTCGACACGGTGACGCTGATGGAGGGCGAGGACGGCTCCAAG
CTCTCGAAGGTGAAGGTGCGCGACCAGCGCGTCCCCGAGCTGGGCGACAAGTTCGCGTCCCGACACGGCC
AGAAGGGCGTCGTGGGCCACCTCGCGCCCCAGGAGGACATGCCCTTCACCGAGGAGGGGGTCGTCCCCGA
CCTCGTGATGAACCCGCACGCGCTGCCGTCCCGGATGACGGTCGGCCACGTGCTGGAGATGCTCGGCGGG
AAGGTCGGCTCGCTGCGCGGCTCGCGGGTCGACGGCACGCCGTTCCAGGGCGAAGACGAGGAGGAGCTCC
GCGGCGGGCTGGAAGAGCACGGGTTCAAATCCTCCGGCAAGGAGGTCATGTACTCCGGCGTCACCGGCGA
GAAGATCGAGGCGGAGATCTTCGTCGGGACGATCTTCTACCACAAGCTGTACCACATGGTGTCGAACAAG
CTCCACGCCCGCTCGCGCGGGCCGGTGCAGGTGCTCACGCGCCAGCCGACCGAGGGCCGCGCCCGCGAGG
GCGGCCTGCGCGTCGGGGAGATGGAGCGCGACACGATCATCGGCCACGGCGCGTCGATGGTGCTCAACGA
ACGGCTCTTGGAGTCCTCGGACGCCGAGACGGTGCACGTCTCCGCGGAAACGGGGCTCGTCGCCGTCGAG
GACCGCGAGCAGCGCCGAGTGTACGACCCGGTCACGGGCGACGAGGACGACATCCACGAGCTCGAGGTGA
GCTACGCGTTCAAGCTCCTCCTCGACGAGATGATCGCCCTCGGCATCCGACCGAAACTCGAACTGGAGGA
CGCAATTTAA

STEP 1 - Enter your input nucleotide sequence(s) in FASTA format.

Paste nucleotide sequences in FASTA format:


or upload a FASTA file:

Notes: Text area input is limited to 10M characters. File upload size is limited to 100 Mb. Internet Explorer does not support file upload.

STEP 2 - Optional inputs.

Job title:

Genetic code: universal

Strands: 6-frame translation of forward and reverse strands 3-frame translation of forward strand

Composition bias filtering: yes no

Minimum ORF length: amino acids

STEP 3 - Submit your job.

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