Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1a4m-A 14.7 4.2 239 349 13 PDB MOLECULE: ADENOSINE DEAMINASE;
2: 3ubp-C 14.5 3.3 212 570 15 PDB MOLECULE: PROTEIN (UREASE GAMMA SUBUNIT);
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=4xd3A Sbjct=1a4mA Z-score=14.7
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DSSP leeelleeelhhhhLLEEEEELLEE----------------------------------- Query rintvrgpitiseaGFTLTHEHICG----------------------------------- 25 ident | | | Sbjct --------tpafnkPKVELHVHLDGaikpetilyfgkkrgialpadtveelrniigmdkp 52 DSSP --------llllllLEEEEEEEHHHlllhhhhhhhhhhhllllllllhhhhhhhhlllll DSSP --------llllHHHHlhhhHLLHHHHHHHHHHHHHHHHHLLLLEEEELLLHHHL----- Query --------ssagFLRAwpefFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDLG----- 72 ident | | | | || | Sbjct lslpgflakfdyYMPV---iAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLanskv 109 DSSP llhhhhhllhhhHHHH---hLLLHHHHHHHHHHHHHHHHHLLEEEEEEEELLHHHlllll DSSP ---------------lLHHHHHHHHHHHL----LEEELEEEELLLLlhhhhlllhhHHHH Query ---------------rDVSLLAEVSRAAD----VHIVAATGLWLDPplsmrlrsveELTQ 113 ident | | Sbjct dpmpwnqtegdvtpddVVDLVNQGLQEGEqafgIKVRSILCCMRHQ---------pSWSL 160 DSSP lllhhhlllllllhhhHHHHHHHHHHHHHhhhlLEEEEEEEEELLL---------hHHHH DSSP HHHHHHHLLLllllLLLLEEEEE-lLLLLLhHHHH-HHHHHHHHHHHHLLLEEEELL-HH Query FFLREIQYGIedtgIRAGIIXVA-tTGKVTpFQEL-VLRAAARASLATGVPVTTHTA-AS 170 ident | | | | | | Sbjct EVLELCKKYN---qKTVVAMDLAgdETIEG-SSLFpGHVEAYEGAVKNGIHRTVHAGeVG 216 DSSP HHHHHHHHLL---lLLEEEEEEEllLLLLL-HHHLhHHHHHHHHHHHHLLEEEEEELlLL DSSP HL-LHHHHHHHHHhllllhhhEEELLHHHLLL-HHHHHHHHHLLLEEEELLHHHLLllll Query QR-GGEQQAAIFEseglspsrVCIGHSDETDD-LSYLTALAARGYLIGLDRIPHSAigle 228 ident | || | | Sbjct SPeVVREAVDILK-------tERVGHGYHTIEdEALYNRLLKENMHFEVCPWSSYL---- 265 DSSP LHhHHHHHHHLLL-------lLEEEELHHHHHlHHHHHHHHHLLLEEEELHHHHHH---- DSSP llllllllLLLLLHhhhhHHHHHHHHLLLhhHEEELLLLlleellllllhhhhhhhHLLL Query dnasasafMGIRSWqtraLLIKALIDQGYmkQILVSNDWlfgissyvtnfmdvmdsVNPD 288 ident | | Sbjct --------TGAWDP-kttHAVVRFKNDKA--NYSLNTDD---------------plIFKS 299 DSSP --------LLLLLL-lllLHHHHHHHLLL--LEEELLLL---------------llLLLL DSSP hhhHHHHlHHHHHHHL-LLLHHHHHHHHlHHHHHH-HLLL--------------l Query gmaFIPLrVIPFLREK-GIPQETLAGITvTNPARF-LSPT--------------l 327 ident | | | | | Sbjct ---TLDT-DYQMTKKDmGFTEEEFKRLN-INAAKSsFLPEeekkellerlyreyq 349 DSSP ---LHHH-HHHHHHHLlLLLHHHHHHHH-HHHHHLlLLLHhhhhhhhhhhhhhll
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct mkinrqqyaesygptvgdevrladtdlwievekdyttygdevnfgggkvlregmgengty 60 DSSP leeehhhhhhhhlllllleeelllllleeellllllllllllllllllllllllllllll DSSP ---------------------------------------------------------lee Query ---------------------------------------------------------rin 3 ident Sbjct trtenvldllltnalildytgiykadigvkdgyivgigkggnpdimdgvtpnmivgtate 120 DSSP lllllllleeeeeeeeeelleeeeeeeeeelleeeeeellllllllllllllllllllle DSSP elleeelhhhhLLEEEEELLEellllhhhhlhhhhllhhhhhhhHHHHHHHHHHLLLLEE Query tvrgpitiseaGFTLTHEHICgssagflrawpeffgsrkalaekAVRGLRRARAAGVRTI 63 ident | || | | | | | Sbjct viaaegkivtaGGIDTHVHFI-----------------------NPDQVDVALANGITTL 157 DSSP eeelllleeeeLEEEEEEELL-----------------------LLLHHHHHHHLLEEEE DSSP EEL-----------LLHH----hllLHHHhHHHHhhhLLEEELEEEElllllhhhhlllh Query VDV-----------STFD----lgrDVSLlAEVSraaDVHIVAATGLwldpplsmrlrsv 108 ident | Sbjct FGGgtgpaegskatTVTPgpwniekMLKS-TEGL---PINVGILGKG------------h 201 DSSP EEElllllhhhhhlLLLLhhhhhhhHHHH-HLLL---LLEEEEEEEL------------l DSSP hHHHHHHHHHHHLlllllllLLLEEEEELLllllhhHHHHHHHHHHHHHHHLLLEEEELL Query eELTQFFLREIQYgiedtgiRAGIIXVATTgkvtpfQELVLRAAARASLATGVPVTTHTA 168 ident | | | | | | Sbjct gSSIAPIMEQIDA-------GAAGLXIHED---wgaTPASIDRSLTVADEADVQVAIHSD 251 DSSP lLLHHHHHHHHHL-------LLLEEEEEHH---hllLHHHHHHHHHHHHHHLLEEEEELL DSSP HHH--lLHHHHHHHHhhlLLLHhhEEELLHHHL---lLHHHHhHHHHLL-LEEEELLHH- Query ASQ--rGGEQQAAIFeseGLSPsrVCIGHSDET---dDLSYLtALAARG-YLIGLDRIP- 221 ident | | | | | Sbjct TLNeagFLEDTLRAI---NGRV--IHSFHVEGAggghAPDIM-AMAGHPnVLPSSTNPTr 305 DSSP LLLlllLHHHHHHHH---LLLL--EEELLLLLLllllLLLHH-HHHHLLlEEELLLLLLl DSSP ---hlLLLLlllllLLLLL--------------------LLLL-HHHHHHHHHHHHhlll Query ---hsAIGLednasASAFM--------------------GIRS-WQTRALLIKALIdqgy 257 ident | | | Sbjct pftvnTIDE-----HLDMLmvchhlkqnipedvafadsrIRPEtIAAEDILHDLGI---- 356 DSSP lllllHHHH-----HHHHHhhhlllllllhhhhhhhhhlLLHHhHHHHHHHHHLLL---- DSSP hhhEEELLLLLleellllllhhhhhhhhlllHHHHHHHlHHHHHHHLL------------ Query mkqILVSNDWLfgissyvtnfmdvmdsvnpdGMAFIPLrVIPFLREKG------------ 305 ident | | | | | Sbjct --iSMMSTDAL-----------------amgRAGEMVL-RTWQTADKMkkqrgplaeekn 396 DSSP --lLLLLLLLL-----------------lllLLLLHHH-HHHHHHHHHhhhhllllllll DSSP ----lLHHHHHHHHLHHHHHHH-------------------------------------- Query ----iPQETLAGITVTNPARFL-------------------------------------- 323 ident ||| Sbjct gsdnfRLKRYVSKYTINPAIAQgiahevgsieegkfadlvlwepkffgvkadrvikggii 456 DSSP lllhhHHHHHHHHHLHHHHHHHlllllllllllllllleeeelhhhlllllleeeellee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 323 ident Sbjct ayaqigdpsasiptpqpvmgrrmygtvgdlihdtnitfmskssiqqgvpaklglkrrigt 516 DSSP eeeeellllllllllllleeeelhhhlllhhhhlleeeelhhhhhllhhhhhlllleeee DSSP --LLLL------------------------------------------------ Query --SPTL------------------------------------------------ 327 ident Sbjct vkNCRNigkkdmkwndvttdidinpetyevkvdgevltcepvkelpmaqryflf 570 DSSP llLLLLllhhhllllllllleeelllllleeelleellllllllllllllllll