Query: 1fkx

MOLECULE: ADENOSINE DEAMINASE;

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1fkx   66.7  0.0  348   348  100 PDB  MOLECULE: ADENOSINE DEAMINASE;                                       
   2:  2kau-C 12.9  3.3  215   566   13 PDB MOLECULE: KLEBSIELLA AEROGENES UREASE;                                


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=1fkx Sbjct=1fkx Z-score=66.7

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DSSP  LLLLLLLEEEEEEEHHHLLLHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLLLHHHHHH
Query TPAFNKPKVELHVHLDGAIKPETILYFGKKRGIALPADTVEELRNIIGMDKPLSLPGFLA   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct TPAFNKPKVELHVHLDGAIKPETILYFGKKRGIALPADTVEELRNIIGMDKPLSLPGFLA   60
DSSP  LLLLLLLEEEEEEEHHHLLLHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLLLHHHHHH


DSSP  LHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLEEEEEEEELLHHHLLLLLLLLHHHLLLLL
Query KFDYYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGD  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KFDYYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGD  120
DSSP  LHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLEEEEEEEELLHHHLLLLLLLLHHHLLLLL


DSSP  LLHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLHHHHHHHHHHHHHLLLLLEEEEEEE
Query VTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLA  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct VTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLA  180
DSSP  LLHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLHHHHHHHHHHHHHLLLLLEEEEEEE


DSSP  LLLLLLLLLLLHHHHHHHHHHHHLLLEEEEEELLLLLHHHHHHHHHLLLLLEEEELHHHH
Query GDETIEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTI  240
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct GDETIEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTI  240
DSSP  LLLLLLLLLLLHHHHHHHHHHHHLLLEEEEEELLLLLHHHHHHHHHLLLLLEEEELHHHH


DSSP  HLHHHHHHHHHLLLEEEELHHHHHHLLLLLLLLLLHHHHHHHLLLEEEELLLLHHHHLLL
Query EDEALYNRLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKST  300
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct EDEALYNRLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKST  300
DSSP  HLHHHHHHHHHLLLEEEELHHHHHHLLLLLLLLLLHHHHHHHLLLEEEELLLLHHHHLLL


DSSP  HHHHHHHHHHLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHL
Query LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEEEKKELLERLYREY  348
ident ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEEEKKELLERLYREY  348
DSSP  HHHHHHHHHHLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHL


No 2: Query=1fkx Sbjct=2kauC Z-score=12.9

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct snisrqayadmfgptvgdkvrladtelwieveddlttygeevkfgggkvirdgmgqgqml   60
DSSP  leeehhhhhhhhlllllleeelllllleeelleellllllllllllllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct aadcvdlvltnalivdhwgivkadigvkdgrifaigkagnpdiqpnvtipigaateviaa  120
DSSP  hhhllleeeeeeeeeelleeeeeeeeeelleeeeeeleellllllllleellllleeeel


DSSP  -llllLLLEEEEEEEHHhlllhhhhhhhhhhhllllllllhhhhhhhhlllllllhhhhh
Query -tpafNKPKVELHVHLDgaikpetilyfgkkrgialpadtveelrniigmdkplslpgfl   59
ident             | |                                             
Sbjct egkivTAGGIDTHIHWI-------------------------------------------  137
DSSP  llleeEELEEEEEEELL-------------------------------------------


DSSP  hlhhhhhhhhlllhhhhhhhHHHHHHHHHHLLEEEEEEEEllhhhllllllllhhhllll
Query akfdyympviagcreaikriAYEFVEMKAKEGVVYVEVRYsphllanskvdpmpwnqteg  119
ident                          |     ||                           
Sbjct --------------------CPQQAEEALVSGVTTMVGGG---------tgpaagthatt  168
DSSP  --------------------LLHHHHHHHHHLEEEEEEEL---------llllhhhhhll


DSSP  lllHHHHHHHHHHHHHHHhhhhLLEEEEEEEEElllHHHHHHHHHHHHHLllllEEEEEE
Query dvtPDDVVDLVNQGLQEGeqafGIKVRSILCCMrhqPSWSLEVLELCKKYnqktVVAMDL  179
ident             |                        |      |         |     
Sbjct ctpGPWYISRMLQAADSL----PVNIGLLGKGN---VSQPDALREQVAAG----VIGLKI  217
DSSP  lllHHHHHHHHHHHHLLL----LLEEEEEEELL---LLLHHHHHHHHHHL----LLEEEE


DSSP  ELLlllllLLLLhHHHHHHHHHHHLLLEEEEEE---llllLHHHHHHHHHLlLLLEEEEL
Query AGDetiegSSLFpGHVEAYEGAVKNGIHRTVHA---gevgSPEVVREAVDIlKTERVGHG  236
ident   |              |   |    |    |          |    |     |    | 
Sbjct HED---wgATPA-AIDCALTVADEMDIQVALHSdtlnesgFVEDTLAAIGG-RTIHTFHT  272
DSSP  EHH---hlLLHH-HHHHHHHHHHHHLLEEEEELlllllllLHHHHHHHHLL-LLEEELLL


DSSP  H--------HHHHlhhhHHHHhhLLLEEEELHHH--------------------------
Query Y--------HTIEdealYNRLlkENMHFEVCPWS--------------------------  262
ident            |            |                                   
Sbjct EgaggghapDIIT----ACAH--PNILPSSTNPTlpytlntidehldmlmvchhldpdia  326
DSSP  LllllllllLHHH----HHHL--LLEEEEELLLLllllllhhhhhhhhhhhllllllllh


DSSP  ---hhhlLLLLLL-LLLHhHHHHHLLLEEEELLLLHHHH-llLHHHHHHHHHHLLL----
Query ---syltGAWDPK-TTHAvVRFKNDKANYSLNTDAPLIF-ksTLDTDYQMTKKDMG----  313
ident                           |      |                    |     
Sbjct edvafaeSRIRREtIAAE-DVLHDLGAFSLTSSDSQAMGrvgEVILRTWQVAHRMKvqrg  385
DSSP  hhhllhhHHLLHHhHHHH-HHHHHHLLLLEELLLLLLLLlllLHHHHHHHHHHHHHhhhl


DSSP  -----------lLHHHHHHH-HHHHHHLLLLlhhhHHHHHhhHHHH--------------
Query -----------fTEEEFKRL-NINAAKSSFLpeeeKKELLerLYRE--------------  347
ident                       || |           |                      
Sbjct alaeetgdndnfRVKRYIAKyTINPALTHGI----AHEVG--SIEVgkladlvvwspaff  439
DSSP  llllllllllhhHHHHHHHHhLHHHHHHLLL----LLLLL--LLLLllllleeeelhhhl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  347
ident                                                             
Sbjct gvkpatvikggmiaiapmgdinasiptpqpvhyrpmfgalgsarhhcrltflsqaaaang  499
DSSP  llllleeeelleeeeeeellllllllllllleeeelhhhlhhhhhhhleeeelhhhhhll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  347
ident                                                             
Sbjct vaerlnlrsaiavvkgcrtvqkadmvhnslqpnitvdaqtyevrvdgelitsepadvlpm  559
DSSP  hhhhhlllleeeellllllllhhhllllllllleeelllllleeelleelllllllllll


DSSP  ------l
Query ------y  348
ident        
Sbjct aqryflf  566
DSSP  lllllll