Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2kau-C 75.3 0.0 566 566 100 PDB MOLECULE: KLEBSIELLA AEROGENES UREASE;
2: 1fkx 13.1 3.3 213 348 14 PDB MOLECULE: ADENOSINE DEAMINASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=2kauC Sbjct=2kauC Z-score=75.3
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DSSP LEEEHHHHHHHHLLLLLLEEELLLLLLEEELLEELLLLLLLLLLLLLLLLLLLLLLLLLL Query SNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML 60 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct SNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML 60 DSSP LEEEHHHHHHHHLLLLLLEEELLLLLLEEELLEELLLLLLLLLLLLLLLLLLLLLLLLLL DSSP HHHLLLEEEEEEEEEELLEEEEEEEEEELLEEEEEELEELLLLLLLLLEELLLLLEEEEL Query AADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAA 120 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct AADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAA 120 DSSP HHHLLLEEEEEEEEEELLEEEEEEEEEELLEEEEEELEELLLLLLLLLEELLLLLEEEEL DSSP LLLEEEELEEEEEEELLLLHHHHHHHHHLEEEEEEELLLLLHHHHHLLLLLHHHHHHHHH Query EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180 DSSP LLLEEEELEEEEEEELLLLHHHHHHHHHLEEEEEEELLLLLHHHHHLLLLLHHHHHHHHH DSSP HHHLLLLLEEEEEEELLLLLHHHHHHHHHHLLLEEEEEHHHLLLHHHHHHHHHHHHHHLL Query QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDI 240 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDI 240 DSSP HHHLLLLLEEEEEEELLLLLHHHHHHHHHHLLLEEEEEHHHLLLHHHHHHHHHHHHHHLL DSSP EEEEELLLLLLLLLHHHHHHHHLLLLEEELLLLLLLLLLLLLHHHHHHLLLEEEEELLLL Query QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300 DSSP EEEEELLLLLLLLLHHHHHHHHLLLLEEELLLLLLLLLLLLLHHHHHHLLLEEEEELLLL DSSP LLLLLLHHHHHHHHHHHLLLLLLLLHHHHLLHHHHLLHHHHHHHHHHHHHLLLLEELLLL Query LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360 DSSP LLLLLLHHHHHHHHHHHLLLLLLLLHHHHLLHHHHLLHHHHHHHHHHHHHLLLLEELLLL DSSP LLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHLHHHHHHLLLLLLL Query QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420 DSSP LLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHLHHHHHHLLLLLLL DSSP LLLLLLLLLLEEEELHHHLLLLLLEEEELLEEEEEEELLLLLLLLLLLLLEEEELHHHLH Query GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480 DSSP LLLLLLLLLLEEEELHHHLLLLLLEEEELLEEEEEEELLLLLLLLLLLLLEEEELHHHLH DSSP HHHHHHLEEEELHHHHHLLHHHHHLLLLEEEELLLLLLLLHHHLLLLLLLLLEEELLLLL Query SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540 DSSP HHHHHHLEEEELHHHHHLLHHHHHLLLLEEEELLLLLLLLHHHLLLLLLLLLEEELLLLL DSSP LEEELLEELLLLLLLLLLLLLLLLLL Query EVRVDGELITSEPADVLPMAQRYFLF 566 ident |||||||||||||||||||||||||| Sbjct EVRVDGELITSEPADVLPMAQRYFLF 566 DSSP LEEELLEELLLLLLLLLLLLLLLLLL
DSSP leeehhhhhhhhlllllleeelllllleeelleellllllllllllllllllllllllll Query snisrqayadmfgptvgdkvrladtelwieveddlttygeevkfgggkvirdgmgqgqml 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP hhhllleeeeeeeeeelleeeeeeeeeelleeeeeeleellllllllleellllleeeel Query aadcvdlvltnalivdhwgivkadigvkdgrifaigkagnpdiqpnvtipigaateviaa 120 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP llleeEELEEEEEEELL------------------------------------------- Query egkivTAGGIDTHIHWI------------------------------------------- 137 ident | | Sbjct -tpafNKPKVELHVHLDgaikpetilyfgkkrgialpadtveelrniigmdkplslpgfl 59 DSSP -llllLLLEEEEEEEHHhlllhhhhhhhhhhhllllllllhhhhhhhhlllllllhhhhh DSSP --------------------lLHHHHHHHHHLEEEEEEElllllhhhhhllLLLH----- Query --------------------cPQQAEEALVSGVTTMVGGgtgpaagthattCTPG----- 172 ident | || | Sbjct akfdyympviagcreaikriaYEFVEMKAKEGVVYVEVR------------YSPHllans 107 DSSP hlhhhhhhhhlllhhhhhhhhHHHHHHHHHLLEEEEEEE------------ELLHhhlll DSSP ----------------HHHHHHHHHHHLLL----LLEEEEEEELL---LLLHHHHHHHHH Query ----------------PWYISRMLQAADSL----PVNIGLLGKGN---VSQPDALREQVA 209 ident | | | Sbjct kvdpmpwnqtegdvtpDDVVDLVNQGLQEGeqafGIKVRSILCCMrhqPSWSLEVLELCK 167 DSSP lllllhhhlllllllhHHHHHHHHHHHHHHhhhhLLEEEEEEEEElllHHHHHHHHHHHH DSSP HL----LLEEEEEHH---hlLLHH-hHHHHHHHHHHHLLEEEEELlllllllLHHHHHHH Query AG----VIGLKIHED---wgATPA-aIDCALTVADEMDIQVALHSdtlnesgFVEDTLAA 261 ident | | | | | | | | Sbjct KYnqktVVAMDLAGDetiegSSLFpgHVEAYEGAVKNGIHRTVHA---gevgSPEVVREA 224 DSSP HLllllEEEEEEELLlllllLLLLhhHHHHHHHHHHLLLEEEEEE---llllLHHHHHHH DSSP HLL-LLEEELLLLllllllllLHHH------hHHLLlEEEEELLLLllllllhhhhhhhh Query IGG-RTIHTFHTEgaggghapDIIT------aCAHPnILPSSTNPTlpytlntidehldm 314 ident | | | Sbjct VDIlKTERVGHGY--------HTIEdealynrLLKEnMHFEVCPWS-------------- 262 DSSP HHLlLLLEEEELH--------HHHHlhhhhhhHHHLlLEEEELHHH-------------- DSSP hhhllllllllhhhhllhhHHLLHHHhHHHHHHHHH-LLLLEELLLLLLLLlllLHHHHH Query lmvchhldpdiaedvafaeSRIRRETiAAEDVLHDL-GAFSLTSSDSQAMGrvgEVILRT 373 ident | | | | Sbjct ---------------syltGAWDPKT-THAVVRFKNdKANYSLNTDAPLIF-ksTLDTDY 305 DSSP ---------------hhhlLLLLLLL-LLHHHHHHHlLLEEEELLLLHHHH-llLHHHHH DSSP HHHHHHHHhhhlllllllllllhhHHHHHHHHhLHHHHHHLLL----LLLLL--LLLLll Query WQVAHRMKvqrgalaeetgdndnfRVKRYIAKyTINPALTHGI----AHEVG--SIEVgk 427 ident | || | | Sbjct QMTKKDMG---------------fTEEEFKRL-NINAAKSSFLpeeeKKELLerLYRE-- 347 DSSP HHHHHLLL---------------lLHHHHHHH-HHHHHHLLLLlhhhHHHHHhhHHHH-- DSSP llleeeelhhhlllllleeeelleeeeeeellllllllllllleeeelhhhlhhhhhhhl Query ladlvvwspaffgvkpatvikggmiaiapmgdinasiptpqpvhyrpmfgalgsarhhcr 487 ident Sbjct ------------------------------------------------------------ 347 DSSP ------------------------------------------------------------ DSSP eeeelhhhhhllhhhhhlllleeeellllllllhhhllllllllleeelllllleeelle Query ltflsqaaaangvaerlnlrsaiavvkgcrtvqkadmvhnslqpnitvdaqtyevrvdge 547 ident Sbjct ------------------------------------------------------------ 347 DSSP ------------------------------------------------------------ DSSP ellllllllllllllllll Query litsepadvlpmaqryflf 566 ident Sbjct ------------------y 348 DSSP ------------------l