Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1fkx 66.7 0.0 348 348 100 PDB MOLECULE: ADENOSINE DEAMINASE;
2: 2kau-C 12.9 3.3 215 566 13 PDB MOLECULE: KLEBSIELLA AEROGENES UREASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=1fkx Sbjct=1fkx Z-score=66.7
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DSSP LLLLLLLEEEEEEEHHHLLLHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLLLHHHHHH Query TPAFNKPKVELHVHLDGAIKPETILYFGKKRGIALPADTVEELRNIIGMDKPLSLPGFLA 60 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct TPAFNKPKVELHVHLDGAIKPETILYFGKKRGIALPADTVEELRNIIGMDKPLSLPGFLA 60 DSSP LLLLLLLEEEEEEEHHHLLLHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLLLHHHHHH DSSP LHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLEEEEEEEELLHHHLLLLLLLLHHHLLLLL Query KFDYYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGD 120 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct KFDYYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGD 120 DSSP LHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLEEEEEEEELLHHHLLLLLLLLHHHLLLLL DSSP LLHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLHHHHHHHHHHHHHLLLLLEEEEEEE Query VTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLA 180 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct VTPDDVVDLVNQGLQEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLA 180 DSSP LLHHHHHHHHHHHHHHHHHHHLLEEEEEEEEELLLHHHHHHHHHHHHHLLLLLEEEEEEE DSSP LLLLLLLLLLLHHHHHHHHHHHHLLLEEEEEELLLLLHHHHHHHHHLLLLLEEEELHHHH Query GDETIEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTI 240 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct GDETIEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTI 240 DSSP LLLLLLLLLLLHHHHHHHHHHHHLLLEEEEEELLLLLHHHHHHHHHLLLLLEEEELHHHH DSSP HLHHHHHHHHHLLLEEEELHHHHHHLLLLLLLLLLHHHHHHHLLLEEEELLLLHHHHLLL Query EDEALYNRLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKST 300 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct EDEALYNRLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKST 300 DSSP HLHHHHHHHHHLLLEEEELHHHHHHLLLLLLLLLLHHHHHHHLLLEEEELLLLHHHHLLL DSSP HHHHHHHHHHLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHL Query LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEEEKKELLERLYREY 348 ident |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEEEKKELLERLYREY 348 DSSP HHHHHHHHHHLLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHL
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct snisrqayadmfgptvgdkvrladtelwieveddlttygeevkfgggkvirdgmgqgqml 60 DSSP leeehhhhhhhhlllllleeelllllleeelleellllllllllllllllllllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct aadcvdlvltnalivdhwgivkadigvkdgrifaigkagnpdiqpnvtipigaateviaa 120 DSSP hhhllleeeeeeeeeelleeeeeeeeeelleeeeeeleellllllllleellllleeeel DSSP -llllLLLEEEEEEEHHhlllhhhhhhhhhhhllllllllhhhhhhhhlllllllhhhhh Query -tpafNKPKVELHVHLDgaikpetilyfgkkrgialpadtveelrniigmdkplslpgfl 59 ident | | Sbjct egkivTAGGIDTHIHWI------------------------------------------- 137 DSSP llleeEELEEEEEEELL------------------------------------------- DSSP hlhhhhhhhhlllhhhhhhhHHHHHHHHHHLLEEEEEEEEllhhhllllllllhhhllll Query akfdyympviagcreaikriAYEFVEMKAKEGVVYVEVRYsphllanskvdpmpwnqteg 119 ident | || Sbjct --------------------CPQQAEEALVSGVTTMVGGG---------tgpaagthatt 168 DSSP --------------------LLHHHHHHHHHLEEEEEEEL---------llllhhhhhll DSSP lllHHHHHHHHHHHHHHHhhhhLLEEEEEEEEElllHHHHHHHHHHHHHLllllEEEEEE Query dvtPDDVVDLVNQGLQEGeqafGIKVRSILCCMrhqPSWSLEVLELCKKYnqktVVAMDL 179 ident | | | | Sbjct ctpGPWYISRMLQAADSL----PVNIGLLGKGN---VSQPDALREQVAAG----VIGLKI 217 DSSP lllHHHHHHHHHHHHLLL----LLEEEEEEELL---LLLHHHHHHHHHHL----LLEEEE DSSP ELLlllllLLLLhHHHHHHHHHHHLLLEEEEEE---llllLHHHHHHHHHLlLLLEEEEL Query AGDetiegSSLFpGHVEAYEGAVKNGIHRTVHA---gevgSPEVVREAVDIlKTERVGHG 236 ident | | | | | | | | | Sbjct HED---wgATPA-AIDCALTVADEMDIQVALHSdtlnesgFVEDTLAAIGG-RTIHTFHT 272 DSSP EHH---hlLLHH-HHHHHHHHHHHHLLEEEEELlllllllLHHHHHHHHLL-LLEEELLL DSSP H--------HHHHlhhhHHHHhhLLLEEEELHHH-------------------------- Query Y--------HTIEdealYNRLlkENMHFEVCPWS-------------------------- 262 ident | | Sbjct EgaggghapDIIT----ACAH--PNILPSSTNPTlpytlntidehldmlmvchhldpdia 326 DSSP LllllllllLHHH----HHHL--LLEEEEELLLLllllllhhhhhhhhhhhllllllllh DSSP ---hhhlLLLLLL-LLLHhHHHHHLLLEEEELLLLHHHH-llLHHHHHHHHHHLLL---- Query ---syltGAWDPK-TTHAvVRFKNDKANYSLNTDAPLIF-ksTLDTDYQMTKKDMG---- 313 ident | | | Sbjct edvafaeSRIRREtIAAE-DVLHDLGAFSLTSSDSQAMGrvgEVILRTWQVAHRMKvqrg 385 DSSP hhhllhhHHLLHHhHHHH-HHHHHHLLLLEELLLLLLLLlllLHHHHHHHHHHHHHhhhl DSSP -----------lLHHHHHHH-HHHHHHLLLLlhhhHHHHHhhHHHH-------------- Query -----------fTEEEFKRL-NINAAKSSFLpeeeKKELLerLYRE-------------- 347 ident || | | Sbjct alaeetgdndnfRVKRYIAKyTINPALTHGI----AHEVG--SIEVgkladlvvwspaff 439 DSSP llllllllllhhHHHHHHHHhLHHHHHHLLL----LLLLL--LLLLllllleeeelhhhl DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 347 ident Sbjct gvkpatvikggmiaiapmgdinasiptpqpvhyrpmfgalgsarhhcrltflsqaaaang 499 DSSP llllleeeelleeeeeeellllllllllllleeeelhhhlhhhhhhhleeeelhhhhhll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 347 ident Sbjct vaerlnlrsaiavvkgcrtvqkadmvhnslqpnitvdaqtyevrvdgelitsepadvlpm 559 DSSP hhhhhlllleeeellllllllhhhllllllllleeelllllleeelleelllllllllll DSSP ------l Query ------y 348 ident Sbjct aqryflf 566 DSSP lllllll