Query: 2kauC

MOLECULE: KLEBSIELLA AEROGENES UREASE;

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2kau-C 75.3  0.0  566   566  100 PDB MOLECULE: KLEBSIELLA AEROGENES UREASE;                                
   2:  1fkx   13.1  3.3  213   348   14 PDB  MOLECULE: ADENOSINE DEAMINASE;                                       


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=2kauC Sbjct=2kauC Z-score=75.3

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DSSP  LEEEHHHHHHHHLLLLLLEEELLLLLLEEELLEELLLLLLLLLLLLLLLLLLLLLLLLLL
Query SNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML   60
DSSP  LEEEHHHHHHHHLLLLLLEEELLLLLLEEELLEELLLLLLLLLLLLLLLLLLLLLLLLLL


DSSP  HHHLLLEEEEEEEEEELLEEEEEEEEEELLEEEEEELEELLLLLLLLLEELLLLLEEEEL
Query AADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAA  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct AADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAA  120
DSSP  HHHLLLEEEEEEEEEELLEEEEEEEEEELLEEEEEELEELLLLLLLLLEELLLLLEEEEL


DSSP  LLLEEEELEEEEEEELLLLHHHHHHHHHLEEEEEEELLLLLHHHHHLLLLLHHHHHHHHH
Query EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML  180
DSSP  LLLEEEELEEEEEEELLLLHHHHHHHHHLEEEEEEELLLLLHHHHHLLLLLHHHHHHHHH


DSSP  HHHLLLLLEEEEEEELLLLLHHHHHHHHHHLLLEEEEEHHHLLLHHHHHHHHHHHHHHLL
Query QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDI  240
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDI  240
DSSP  HHHLLLLLEEEEEEELLLLLHHHHHHHHHHLLLEEEEEHHHLLLHHHHHHHHHHHHHHLL


DSSP  EEEEELLLLLLLLLHHHHHHHHLLLLEEELLLLLLLLLLLLLHHHHHHLLLEEEEELLLL
Query QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT  300
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT  300
DSSP  EEEEELLLLLLLLLHHHHHHHHLLLLEEELLLLLLLLLLLLLHHHHHHLLLEEEEELLLL


DSSP  LLLLLLHHHHHHHHHHHLLLLLLLLHHHHLLHHHHLLHHHHHHHHHHHHHLLLLEELLLL
Query LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS  360
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS  360
DSSP  LLLLLLHHHHHHHHHHHLLLLLLLLHHHHLLHHHHLLHHHHHHHHHHHHHLLLLEELLLL


DSSP  LLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHLHHHHHHLLLLLLL
Query QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV  420
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV  420
DSSP  LLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHLHHHHHHLLLLLLL


DSSP  LLLLLLLLLLEEEELHHHLLLLLLEEEELLEEEEEEELLLLLLLLLLLLLEEEELHHHLH
Query GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG  480
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG  480
DSSP  LLLLLLLLLLEEEELHHHLLLLLLEEEELLEEEEEEELLLLLLLLLLLLLEEEELHHHLH


DSSP  HHHHHHLEEEELHHHHHLLHHHHHLLLLEEEELLLLLLLLHHHLLLLLLLLLEEELLLLL
Query SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY  540
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY  540
DSSP  HHHHHHLEEEELHHHHHLLHHHHHLLLLEEEELLLLLLLLHHHLLLLLLLLLEEELLLLL


DSSP  LEEELLEELLLLLLLLLLLLLLLLLL
Query EVRVDGELITSEPADVLPMAQRYFLF  566
ident ||||||||||||||||||||||||||
Sbjct EVRVDGELITSEPADVLPMAQRYFLF  566
DSSP  LEEELLEELLLLLLLLLLLLLLLLLL


No 2: Query=2kauC Sbjct=1fkx Z-score=13.1

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DSSP  leeehhhhhhhhlllllleeelllllleeelleellllllllllllllllllllllllll
Query snisrqayadmfgptvgdkvrladtelwieveddlttygeevkfgggkvirdgmgqgqml   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  hhhllleeeeeeeeeelleeeeeeeeeelleeeeeeleellllllllleellllleeeel
Query aadcvdlvltnalivdhwgivkadigvkdgrifaigkagnpdiqpnvtipigaateviaa  120
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  llleeEELEEEEEEELL-------------------------------------------
Query egkivTAGGIDTHIHWI-------------------------------------------  137
ident             | |                                             
Sbjct -tpafNKPKVELHVHLDgaikpetilyfgkkrgialpadtveelrniigmdkplslpgfl   59
DSSP  -llllLLLEEEEEEEHHhlllhhhhhhhhhhhllllllllhhhhhhhhlllllllhhhhh


DSSP  --------------------lLHHHHHHHHHLEEEEEEElllllhhhhhllLLLH-----
Query --------------------cPQQAEEALVSGVTTMVGGgtgpaagthattCTPG-----  172
ident                          |     ||                    |      
Sbjct akfdyympviagcreaikriaYEFVEMKAKEGVVYVEVR------------YSPHllans  107
DSSP  hlhhhhhhhhlllhhhhhhhhHHHHHHHHHLLEEEEEEE------------ELLHhhlll


DSSP  ----------------HHHHHHHHHHHLLL----LLEEEEEEELL---LLLHHHHHHHHH
Query ----------------PWYISRMLQAADSL----PVNIGLLGKGN---VSQPDALREQVA  209
ident                         |                        |      |   
Sbjct kvdpmpwnqtegdvtpDDVVDLVNQGLQEGeqafGIKVRSILCCMrhqPSWSLEVLELCK  167
DSSP  lllllhhhlllllllhHHHHHHHHHHHHHHhhhhLLEEEEEEEEElllHHHHHHHHHHHH


DSSP  HL----LLEEEEEHH---hlLLHH-hHHHHHHHHHHHLLEEEEELlllllllLHHHHHHH
Query AG----VIGLKIHED---wgATPA-aIDCALTVADEMDIQVALHSdtlnesgFVEDTLAA  261
ident       |       |              |   |    |    |          |    |
Sbjct KYnqktVVAMDLAGDetiegSSLFpgHVEAYEGAVKNGIHRTVHA---gevgSPEVVREA  224
DSSP  HLllllEEEEEEELLlllllLLLLhhHHHHHHHHHHLLLEEEEEE---llllLHHHHHHH


DSSP  HLL-LLEEELLLLllllllllLHHH------hHHLLlEEEEELLLLllllllhhhhhhhh
Query IGG-RTIHTFHTEgaggghapDIIT------aCAHPnILPSSTNPTlpytlntidehldm  314
ident      |    |            |                                    
Sbjct VDIlKTERVGHGY--------HTIEdealynrLLKEnMHFEVCPWS--------------  262
DSSP  HHLlLLLEEEELH--------HHHHlhhhhhhHHHLlLEEEELHHH--------------


DSSP  hhhllllllllhhhhllhhHHLLHHHhHHHHHHHHH-LLLLEELLLLLLLLlllLHHHHH
Query lmvchhldpdiaedvafaeSRIRRETiAAEDVLHDL-GAFSLTSSDSQAMGrvgEVILRT  373
ident                          |     |      |      |              
Sbjct ---------------syltGAWDPKT-THAVVRFKNdKANYSLNTDAPLIF-ksTLDTDY  305
DSSP  ---------------hhhlLLLLLLL-LLHHHHHHHlLLEEEELLLLHHHH-llLHHHHH


DSSP  HHHHHHHHhhhlllllllllllhhHHHHHHHHhLHHHHHHLLL----LLLLL--LLLLll
Query WQVAHRMKvqrgalaeetgdndnfRVKRYIAKyTINPALTHGI----AHEVG--SIEVgk  427
ident       |                           || |           |          
Sbjct QMTKKDMG---------------fTEEEFKRL-NINAAKSSFLpeeeKKELLerLYRE--  347
DSSP  HHHHHLLL---------------lLHHHHHHH-HHHHHHLLLLlhhhHHHHHhhHHHH--


DSSP  llleeeelhhhlllllleeeelleeeeeeellllllllllllleeeelhhhlhhhhhhhl
Query ladlvvwspaffgvkpatvikggmiaiapmgdinasiptpqpvhyrpmfgalgsarhhcr  487
ident                                                             
Sbjct ------------------------------------------------------------  347
DSSP  ------------------------------------------------------------


DSSP  eeeelhhhhhllhhhhhlllleeeellllllllhhhllllllllleeelllllleeelle
Query ltflsqaaaangvaerlnlrsaiavvkgcrtvqkadmvhnslqpnitvdaqtyevrvdge  547
ident                                                             
Sbjct ------------------------------------------------------------  347
DSSP  ------------------------------------------------------------


DSSP  ellllllllllllllllll
Query litsepadvlpmaqryflf  566
ident                    
Sbjct ------------------y  348
DSSP  ------------------l