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<TITLE>Dali: PF19306</TITLE><A name=s001A>
<h1>Results: PF19306</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="title" VALUE="PF19306">
<input TYPE="hidden" NAME="jobid" VALUE=PF19306>
<input TYPE="hidden" NAME="query_sequence" VALUE="NCLDVLAQHLVGMALEKVWDVDEAYNLIKKAYPYKDLSKKDFLDVLNYLAGGIEEKNVYAKIWLKDNKFGKRGKSVRAIYYMNVGTIPDETAVDVIADGKYVGEVEEEFAEKLMKGDIFVLGGKTYKYLGGRGNKIRVKEV"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLHHHHHHHHHHHHHHLLEEHHHHHHHHLLLHHHLLLLHHHHHHHHHHHHLLLHHHLLLLLEEEELLEEEELLLLHHHHHHHHLLLLLLLLLEEEEELLEEEEEELHHHHHHLLLLLEEEELLEEEEEEEEELLEEEEEEL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="141  413   414   415   416   417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   433   434   435   436   437   438   439   440   441   442   443   444   445   446   447   448   449   450   451   452   453   454   455   456   457   458   459   460   461   462   463   464   465   466   467   468   469   470   471   472   473   474   475   476   477   478   479   480   481   482   483   484   485   486   487   488   489   490   491   492   493   494   495   496   497   498   499   500   501   502   503   504   505   506   507   508   509   510   511   512   513   514   515   516   517   518   519   520   521   522   523   524   525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540   541   542   543   544   545   546   547   548   549   550   551   552   553 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5v9xA sequence=adplgrfsaltrewfttafaaptpaqadawsaisegnntlviaptgsgktlaaflwaidrladpqgtqvlyvsplkalavdvernlrtpltgitrvaerhglpapsitvgvrsgdtppnqrramianppdvlittpeslflmltsaaretltsvrtvivdevhavaatkrgahlalslerldqlldtpaqriglsatvrppeevarflsgqapttivcppaaktfdlsvqvpvpdmanldnnsiwpdveerivdlveahnssivfansrrlaerltsrlneihaersgieppllarahhgsvskeqraqveddlksgrlravvatsslelgidmgavdlviqveappsvasglqrvgraghqvgeisqgvlfpkhrtdligcavtvqrmqtgdietlrvpaNPLDVLAQHTVAVAALEPVDADAWFDAVRRSAPFATLPRSAFEATLDLLSGKAELRPRLVYDrdTGTLTARPGAQRLAVTSGGAIPDRGMFTVylaseteELDEEMVYESpgqPARLpfwrgdsvgrpaelgaavgaftgelasldrkafdkrcqkmgfagyatdnlhqllreqreatgvvpsdttfvverfrdelgdwrvilhspyglrvhgplalavgrrlrerygidekptasddgiivrlpdspgadlfvfdadeiepivtaevggsalfasrfrecaaralllprrhpgkrsplwhqrqraaqlldiarkypdfpivleavreclqdvydvpalielmhkiaqrrlrivevetatpspfaaSLLFG dssp=llhhhhllhhhhhhhhhhlllllhhhhhhhhhhhllleeeeellllllhhhhhhhhhhhhhhlllllleeeelllhhhhhhhhhhlhhhhhhhhhhhhhllllllllleeeelllllhhhhhhhhhlllleeeelhhhhhhhhllhhhhhhlllleeeeellhhhhllhhhhhhhhhhhhhhllllllleeeeeelllllhhhhhhhhhlllleeeellllllleeeeeeelllllllllllllhhhhhhhhhhhhhllleeeeelllhhhhhhhhhhhhhhhhhhhllllllleeeelllllhhhhhhhhhhhhllllleeeelhhhlllllllleeeeeeelllllhhhhhhhhlllllllllleeeeeelllhhhhhhhhhhhhhhhhllllllllllLLHHHHHHHHHHHLLLLLEEHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHLLLLLLLLEEEEllLLEEEELLLHHHHHHLLLLLLLLLLLLLLlllllllLLLHHHHHLLlllLLLLlllllllllllhhhhhhhhhhhhhhllllhhhhhhhhhllleeelhhhhhhhhhhhhhhhhllllllleeeeeeeellllleeeeeellllhhhhhhhhhhhhhhhhhhllllllleeelleeeeeelllllhhhllllhhhhhhhhhhhhhhlhhhhhhhhhhhhhllllllllllllllhhhhhhhhhhhhhhhllllllhhhhhhhhhhhhllllhhhhhhhhhhhhlllleeeeeelllllhhhhHHLLL qstarts=0,55,65,74,103,115,121 sstarts=401,453,465,473,501,514,767 lengths=52,10,8,21,10,4,4 u=0.130842,-0.569908,0.811224,0.991402,0.073952,-0.107949,0.001529,0.818374,0.574684 t=-37,-23,7 segments=438-489,496-505,508-515,516-536,550-559,591-594,848-851 compnd=_ATP-DEPENDENT_DNA_HELICASE;>"   <A HREF=#alignment-1>1</A>:  5v9x-A 14.1  3.6  109   772   25 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5v9x&u=0.130842,-0.569908,0.811224,0.991402,0.073952,-0.107949,0.001529,0.818374,0.574684&t=-37,-23,7">PDB</A>  MOLECULE: ATP-DEPENDENT DNA HELICASE;                                

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5v9xA Z-score=14.1</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct adplgrfsaltrewfttafaaptpaqadawsaisegnntlviaptgsgktlaaflwaidr   60
DSSP  llhhhhllhhhhhhhhhhlllllhhhhhhhhhhhllleeeeellllllhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ladpqgtqvlyvsplkalavdvernlrtpltgitrvaerhglpapsitvgvrsgdtppnq  120
DSSP  hhlllllleeeelllhhhhhhhhhhlhhhhhhhhhhhhhllllllllleeeelllllhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct rramianppdvlittpeslflmltsaaretltsvrtvivdevhavaatkrgahlalsler  180
DSSP  hhhhhhlllleeeelhhhhhhhhllhhhhhhlllleeeeellhhhhllhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ldqlldtpaqriglsatvrppeevarflsgqapttivcppaaktfdlsvqvpvpdmanld  240
DSSP  hhllllllleeeeeelllllhhhhhhhhhlllleeeellllllleeeeeeelllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct nnsiwpdveerivdlveahnssivfansrrlaerltsrlneihaersgieppllarahhg  300
DSSP  llllhhhhhhhhhhhhhllleeeeelllhhhhhhhhhhhhhhhhhhhllllllleeeell


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct svskeqraqveddlksgrlravvatsslelgidmgavdlviqveappsvasglqrvgrag  360
DSSP  lllhhhhhhhhhhhhllllleeeelhhhlllllllleeeeeeelllllhhhhhhhhllll


DSSP  -----------------------------------------LLHHHHHHHHHHHHHHLLE
Query -----------------------------------------NCLDVLAQHLVGMALEKVW   19
ident                                          | ||||||| |  |     
Sbjct hqvgeisqgvlfpkhrtdligcavtvqrmqtgdietlrvpaNPLDVLAQHTVAVAALEPV  420
DSSP  lllllleeeeeelllhhhhhhhhhhhhhhhhllllllllllLLHHHHHHHHHHHLLLLLE


DSSP  EHHHHHHHHLLLHHHLLLLHHHHHHHHHHHHLLlhhHLLLLLEEEE--LLEEEELLlLHH
Query DVDEAYNLIKKAYPYKDLSKKDFLDVLNYLAGGieeKNVYAKIWLK--DNKFGKRGkSVR   77
ident | |          |   |    |   |  | |                      |     
Sbjct DADAWFDAVRRSAPFATLPRSAFEATLDLLSGK---AELRPRLVYDrdTGTLTARP-GAQ  476
DSSP  EHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHLL---LLLLLLEEEEllLLEEEELL-LHH


DSSP  HHHHHHLLLLLLLLLEEEeelleeeeEELHHHHHHL-llLLEE-----------------
Query AIYYMNVGTIPDETAVDViadgkyvgEVEEEFAEKL-mkGDIF-----------------  119
ident        | |||     |        |  ||                             
Sbjct RLAVTSGGAIPDRGMFTV-ylaseteELDEEMVYESpgqPARLpfwrgdsvgrpaelgaa  535
DSSP  HHHHLLLLLLLLLLLLLL-lllllllLLLHHHHHLLlllLLLLlllllllllllhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  119
ident                                                             
Sbjct vgaftgelasldrkafdkrcqkmgfagyatdnlhqllreqreatgvvpsdttfvverfrd  595
DSSP  hhhhhhhhllllhhhhhhhhhllleeelhhhhhhhhhhhhhhhhllllllleeeeeeeel


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  119
ident                                                             
Sbjct elgdwrvilhspyglrvhgplalavgrrlrerygidekptasddgiivrlpdspgadlfv  655
DSSP  lllleeeeeellllhhhhhhhhhhhhhhhhhhllllllleeelleeeeeelllllhhhll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  119
ident                                                             
Sbjct fdadeiepivtaevggsalfasrfrecaaralllprrhpgkrsplwhqrqraaqlldiar  715
DSSP  llhhhhhhhhhhhhhhlhhhhhhhhhhhhhllllllllllllllhhhhhhhhhhhhhhhl


DSSP  --------------------------------------------------eeLLEEeeee
Query --------------------------------------------------vlGGKTykyl  129
ident                                                             
Sbjct kypdfpivleavreclqdvydvpalielmhkiaqrrlrivevetatpspfaaSLLF----  771
DSSP  lllllhhhhhhhhhhhhllllhhhhhhhhhhhhlllleeeeeelllllhhhhHHLL----


DSSP  eeelleeeeeel
Query ggrgnkirvkev  141
ident             
Sbjct -----------g  772
DSSP  -----------l


</PRE>
</PRE>
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<H1>PF19306</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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