Results: PF19043
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 4zgo-A 16.4 3.3 229 252 14 PDB MOLECULE: CELL DIVISION CYCLE PROTEIN 123;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=4zgoA Z-score=16.4
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DSSP leeeeeelllhhhllllllllllllllllllllhhhhhhhhhhhhhllleeeeeeellle Query rtfvfitnipdflleplstastsatirrrenrdplyerlrallaantsgvmlvmhlqtrg 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP eeeeeellhhhhhhhhhllllleelleelllleeeellllllllllllllleeeelleee Query yalalyasekealeacktnivpeqpghkysplllrilrrerpapseavytptltvegevv 120 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP ehhhhlllhhhhhhhlllllllllhhhhhlllllllhhhhhhhlhhhlllllllllllhH Query qkaeladtrglelvyrgravakwcphtlaredclfgtacyrlhkrayqktvlkrprlgeA 180 ident Sbjct -----------------------------------------------------------T 1 DSSP -----------------------------------------------------------L DSSP HLLlllhhhHHHHHHHHlLHHHHHHhlLLHHHLLlLLEEEE-ELHHHHHHhHHLLL---l Query VVHhmtpeeRALVHRIScNTRRAEEcvIPAEMRIdFSLHVS-LTRDEAEAlVDDAA---g 236 ident Sbjct LIL------TKNQVLHC-QFSSWYS--LFRKLTP-KAKVIKpIPATVLKY-LHEDSiyvy 50 DSSP LLL------LHHHHHHL-LHHHHHH--HHHHHLL-LEEEELlLLHHHHHH-HLLLLllll DSSP LLLHHHHHHHHHHLLLLLLLEEEEELLllLLLLLHHHlllllHHHHhhhhllllllllll Query VVPASVLQRVEAACAGHGGPYFVKFDFpgGAPWDWSLhddreGLPRlrqrlpfpengapt 296 ident | | | || | | | Sbjct YPEREAIQLIEKAIKELGGAVVPKLNW--STPKDALW-----ITTT-------------- 89 DSSP LLLHHHHHHHHHHHHHLLLLEEEELLL--LLLHHHHH-----HLLL-------------- DSSP hhhhhhhhhhhhhhhhHHLLLLLHHHHHHHHHLLHHHHHHHHHHHH--------lHHHLL Query plerdifcqqllyhlnQMNRFETISSALRALAHSPKVQEALRRVAQ--------nPRVHE 348 ident | | | | | | | Sbjct ----------------GSLKCTTAEEVLLLLKSSDFVAHDLNHAFDdckdfdnadGSVPK 133 DSSP ----------------LLLLLLLHHHHHHHHHLLHHHHHHHHLLLLlllllllllLLLLL DSSP LlllllllllLLEEEEEEELLLLLLHhHEEEEEEEHhhLEEEEEEELLllLLLLLLhhhh Query GkpeegeggaVALGLCIRPWLFLPTVgVEVSVLLESggDRVRGIVQRRsaLRLMTCfsfl 408 ident | | | | | || Sbjct D---------FSFELVLKEWFPMHAS-TEFRCFVKS--KRLIAFCQRD--DNYYEF---- 175 DSSP L---------LLLLEEEEELLLLLHH-HEEEEEEEL--LEEEEEEELL--LLLLHH---- DSSP hhllllllllllllllllhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhllllllll Query qkhgmnlsryavigsgqdvyaeesLEAEMRRVEKAVKRAVEGlRQHLrqqvsrggqlpsn 468 ident | || Sbjct ------------------------LKENIDCYEKLISDLLKK-LDTF-----------pd 199 DSSP ------------------------HHLLHHHHHHHHHHHHHL-LLLL-----------ll DSSP LLEEEEEEEELlllllllllllllllLEEEEEEEELHH--HHHHHHHhhlHHHHLLLL-- Query AAWCFQLAVMPstspssvaagedaaeMRCVVLSMKPYE--EAFEEFTamhPSLMRDEA-- 524 ident | | | | | Sbjct PDFVFDVYIHK---------------DRAWLIDINPFYprTDGLLFS--wSELESMNSen 242 DSSP LLEEEEEEEEL---------------LEEEEEEEEELLllLLLLLLL--hHHHHHLLLll DSSP -lLLEELLLLlllllllllhhhhhhhlll Query -vTDVIWNTKrhtyvalfprelmerlked 552 ident | Sbjct mkPEIRLIPK------------------- 252 DSSP llLEEELLLL-------------------
