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<TITLE>Dali: PF18658</TITLE><A name=s001A>
<h1>Results: PF18658</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="QPRWKMDFLMDYDCRKHGLICMVCGATLATLKVSTIKRHILQVHPHSLDYSPEERQLVLLCYNQ"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLHHHHHLLEEEELLLLEEEELLLLLEELLLLHHHHHHHHHHHLHHHHLLLHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="64  525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540   541   542   543   544   545   546   547   548   549   550   551   552   553   554   555   556   557   558   559   560   561   562   563   564   565   566   567   568   569   570   571   572   573   574   575   576   577   578   579   580   581   582   583   584   585   586   587   588 
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<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
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<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6iw6A sequence=emdylenatvidesaltpeqrlglkqaEERLERDHIFRLEKrspeytnCRYLCKLCLIHIENIQGAHKHIKEkRHKKNILeKQEESELRSLPPPSPAHLAALSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLIKVLGILKKNVLYVDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDFALEEYVICVRIQDILTRENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERFRAAYRYFACPQVDFKLEHHHHHH dssp=lhhhhhhllllllllllhhhhhhhhhhHHHHHLLLEEELLLlllllllLLEEELLLLEEELLHHHHHHHHLLhHHHHHHHhHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHLLLLLLEEEEELHHHHLLLLLLLLEEEEEELLLLLLHHHHHHHHHHHHHHLLLEEEEEEELLLLLLEEEEEELLLLLEEEEEELLHHHHHHHHHHHHHHHHLLLHHHHHHHHHHLLLHHHHLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHLEEEEEELLLEEEEELLLLLLLLLLEEEEELLLLLLLLLLHHHHHHHHHHHHHLLLLLLLEELLLLLLLLEELLLLLLLLLLLLLEELLEEEEEHHHHHLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL qstarts=0,7,16,29,34,42,49 sstarts=27,33,48,60,64,73,81 lengths=6,8,12,4,8,7,5 u=0.162080,-0.817616,-0.552479,-0.986776,-0.135168,-0.089454,-0.001539,0.559672,-0.828713 t=55,-9,-57 segments=281-286,287-294,302-313,314-317,318-325,327-333,335-339 compnd=_TERMINAL_URIDYLYLTRANSFERASE_4,TERMINAL_URIDYLYLT>"   <A HREF=#alignment-1>1</A>:  6iw6-A  4.2  3.3   50   438   14 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6iw6&u=0.162080,-0.817616,-0.552479,-0.986776,-0.135168,-0.089454,-0.001539,0.559672,-0.828713&t=55,-9,-57">PDB</A>  MOLECULE: TERMINAL URIDYLYLTRANSFERASE 4,TERMINAL URIDYLYLT          

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6iw6A Z-score=4.2</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ---------------------------LLHHHHhLLEEEELL------lLEEEELLLLLE
Query ---------------------------QPRWKMdFLMDYDCR------kHGLICMVCGAT   27
ident                              |                       |  |   
Sbjct emdylenatvidesaltpeqrlglkqaEERLER-DHIFRLEKrspeytnCRYLCKLCLIH   59
DSSP  lhhhhhhllllllllllhhhhhhhhhhHHHHHL-LLEEELLLlllllllLLEEELLLLEE


DSSP  ElLLLHhHHHHHHHH-HLHHHHL-LLHHH-------------------------------
Query LaTLKVsTIKRHILQ-VHPHSLD-YSPEE-------------------------------   54
ident            ||    |         |                                
Sbjct I-ENIQ-GAHKHIKEkRHKKNILeKQEESelrslpppspahlaalsvavielakehgitd  117
DSSP  E-LLHH-HHHHHHLLhHHHHHHHhHHHHHhhhllllllhhhhhhhhhhhhhhhhhhlllh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   54
ident                                                             
Sbjct ddlrvrqeiveemskvittflpecslrlygssltrfalkssdvnidikfppkmnhpdlli  177
DSSP  hhhhhhhhhhhhhhhhhhlllllleeeeelhhhhlllllllleeeeeellllllhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   54
ident                                                             
Sbjct kvlgilkknvlyvdvesdfhakvpvvvcrdrksgllcrvsagndmaclttdlltalgkie  237
DSSP  hhhhhhhhllleeeeeeelllllleeeeeellllleeeeeellhhhhhhhhhhhhhhhhl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   54
ident                                                             
Sbjct pvfiplvlafrywaklcyidsqtdggipsycfalmvmfflqqrkppllpcllgswiegfd  297
DSSP  llhhhhhhhhhhlllhhhhlllllllhhhhhhhhhhhhhhhhllllllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   54
ident                                                             
Sbjct pkrmddfqlkgiveekfvkwecnsssatkekhgksplaletpnrvslgqlwlellkfytl  357
DSSP  lllhhhleeeeeellleeeeelllllllllleeeeellllllllllhhhhhhhhhhhhhl


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------   54
ident                                                             
Sbjct dfaleeyvicvriqdiltrenknwpkrriaiedpfsvkrnvarslnsqlvyeyvverfra  417
DSSP  lllllleelllllllleellllllllllllleelleeeeehhhhhllhhhhhhhhhhhhh


DSSP  -----------hhhhhhhhhl
Query -----------rqlvllcynq   64
ident                      
Sbjct ayryfacpqvdfklehhhhhh  438
DSSP  hhhhhllllllllllllllll


</PRE>
</PRE>
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<H1>PF18658</H1>
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