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<TITLE>Dali: PF18168</TITLE><A name=s001A>
<h1>Results: PF18168</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="PRSEETPHNDCALVVAERLMAFPPHMRHFHSICGRENVPCDFFADVDLPNETPASGEKLLLEMLNYLEVRLEGIGFHQPSFLVLANEVPSPDKVSYHVHARSMGAMDEKTTADDEEGDDDANEHENEDEEADLAGTKGSPRGKKRNNNNNNNKKAAKAKKGQKQKKIIAFQDYRVVRLLADEVNTTLGRTVVDEQCYRANGMLRCAFSSKIAPSPNGGVVRQKGKRLVPMLKAQ"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLLLHHHHHHHHHHLLLHHHLLLEEEELLLLLLLLEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEEEELLLLLLEEEEEEEEEELLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLHHHLLLLLEEEELLLLLLLLLLLLLLLLLLLLLEEELLLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="234  307   308   309   310   311   312   313   314   315   316   317   318   319   320   321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   433   434   435   436   437   438   439   440   441   442   443   444   445   446   447   448   449   450   451   452   453   454   455   456   457   458   459   460   461   462   463   464   465   466   467   468   469   470   471   472   473   474   475   476   477   478   479   480   481   482   483   484   485   486   487   488   489   490   491   492   493   494   495   496   497   498   499   500   501   502   503   504   505   506   507   508   509   510   511   512   513   514   515   516   517   518   519   520   521   522   523   524   525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540 
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<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
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<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5l2xB sequence=ppsiwrlfhrqaqafnfvkscKEDVhvfaleckvgdgqriylvtTYAEFWFYYKSRKNLLHCYEVIPENAVCKLYFDLEFNKpaNPGADGKKMVALLIEYVCKALQElYGVNCsaeDVLNLDSSTDEKFSRHLIFQLHDVAFKDNIHVGNFLRKILQPALdllpdlsflvvknnmgekHLFVDLGVYTRNRNFRLYKSskiGKRVALEVTEDNKFFPIQSKDVSDEYQYFLSSLVSNVRFSDTLRILTCEP dssp=lllleeeellhhhhhhhhhhhLLLLeeeeeellllllleeeeeeLHHHHHHHHLLLLLLLLEEEEELLLLLLLLEEEEEEELllLLLLLHHHHHHHHHHHHHHHHHHhHLLLLlhhHEEEEELLLLLEEEEEEEELLLLEEELLHHHHHHHHHHHHHHHHllllllhhheeellllleEELLLHHHLLLLEEEELLLLlllLLLLLLEELLLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLEEELLLL qstarts=6,10,23,34,50,73,79,88,166,188,200,221 sstarts=21,44,56,66,84,108,116,123,138,178,189,201 lengths=4,12,10,16,23,5,7,15,22,11,9,11 u=0.196411,-0.674011,0.712132,0.928097,0.362095,0.086736,-0.316320,0.643892,0.696667 t=-68,-27,81 segments=59-62,82-93,94-103,104-119,122-144,146-150,154-160,161-175,176-197,276-286,287-295,299-309 compnd=_DNA-DIRECTED_PRIMASE/POLYMERASE_PROTEIN;>"   <A HREF=#alignment-1>1</A>:  5l2x-B 10.7  3.4  145   251   18 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5l2x&u=0.196411,-0.674011,0.712132,0.928097,0.362095,0.086736,-0.316320,0.643892,0.696667&t=-68,-27,81">PDB</A>  MOLECULE: DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN;                   

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5l2xB Z-score=10.7</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ---------------llllllLLLL-------------------HHHHHHHHHHLLlHHH
Query ---------------prseetPHND-------------------CALVVAERLMAFpPHM   26
ident                                                             
Sbjct ppsiwrlfhrqaqafnfvkscKEDVhvfaleckvgdgqriylvtTYAEFWFYYKSR-KNL   59
DSSP  lllleeeellhhhhhhhhhhhLLLLeeeeeellllllleeeeeeLHHHHHHHHLLL-LLL


DSSP  LLLEEEElLLLLLLLEEEEEEEEL--LLHHHHHHHHHHHHHHHHHHHHH-LLLLL--eEE
Query RHFHSICgRENVPCDFFADVDLPN--ETPASGEKLLLEMLNYLEVRLEG-IGFHQ--pSF   81
ident  |       ||  |    |          | | |       |    |    |        
Sbjct LHCYEVI-PENAVCKLYFDLEFNKpaNPGADGKKMVALLIEYVCKALQElYGVNCsaeDV  118
DSSP  LLEEEEE-LLLLLLLLEEEEEEELllLLLLLHHHHHHHHHHHHHHHHHHhHLLLLlhhHE


DSSP  EEEEEllLLLLEEEEEEEEEELllllhhhlllllllllllllllllllllllllllllll
Query LVLANevPSPDKVSYHVHARSMgamdekttaddeegdddanehenedeeadlagtkgspr  141
ident | |        | | |                                            
Sbjct LNLDS--STDEKFSRHLIFQLH--------------------------------------  138
DSSP  EEEEL--LLLLEEEEEEEELLL--------------------------------------


DSSP  lllllllllllllllllllllllllLLLLLLHHHHHHHHHHHHHHHL-------------
Query gkkrnnnnnnnkkaakakkgqkqkkIIAFQDYRVVRLLADEVNTTLG-------------  188
ident                            || |   |                         
Sbjct -------------------------DVAFKDNIHVGNFLRKILQPALdllpdlsflvvkn  173
DSSP  -------------------------LEEELLHHHHHHHHHHHHHHHHllllllhhheeel


DSSP  -----LLLLLHHHLLLlLEEEELLLLllllllllllllLLLLLEEELLL-----------
Query -----RTVVDEQCYRAnGMLRCAFSSkiapspnggvvrQKGKRLVPMLK-----------  232
ident         ||   |           |             |   |                
Sbjct nmgekHLFVDLGVYTR-NRNFRLYKS---------skiGKRVALEVTEDnkffpiqskdv  223
DSSP  lllleEELLLHHHLLL-LEEEELLLL---------lllLLLLLLEELLLlllllllllll


DSSP  --------------------------ll
Query --------------------------aq  234
ident                             
Sbjct sdeyqyflsslvsnvrfsdtlriltcep  251
DSSP  lhhhhhhhhhllllllllllleeellll


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<H1>PF18168</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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