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<TITLE>Dali: PF18143</TITLE><A name=s001A>
<h1>Results: PF18143</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="VIFLDIDGVLLPVPRFTFGGGELSEQSVLILQQIVKGCGGREKVSIILSSTWRNFPDQVRRLNQFIEKTTGTEVPAVAGGTPNGTPKTTVVTYFPDDPSEQRLVRDRVDEVKRWIHTHMQDYPEAIGGRWFAIDDMQLDVDERMRGHFLKTETETGLTEGDV"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LEEELLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLHHHLLEEELLHHHHLHHHHHHHHHHHHHHHLLLLLLEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLHHHHLLLLEEEELLLHHHLHHHLLLEEELLLLLLLLHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="162    8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=3qu2D sequence=klkAVLFDMDGVLFNSMPYHSeawhqvmkthgldlsreeaymhegrtgastinivfqrelgkeatqeeiesiyheksilfnsypeAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHkELMVtafDVKYGKPNPEPYLMALKKGGLKADEAVVIENApLGVEagHKAGiFTIAVNTGpldgqvlldagadllfpsMQTLCDSWDTIML dssp=lllEEEELLLLLLLLLHHHHHhhhhhhhhhllllllhhhhhhlllllhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhllllLLLLLLHHHHHHHHHHLLLEEEEELLLLLLLHHHHHHHHLLLLLLhHHEElllLLLLLLLLLHHHHHHHHHHLLLHHHEEEEELLhHHHHhhHHLLlEEEEELLLlllhhhhhhlllleeellHHHHHHHHHHHLL qstarts=0,16,20,43,53,73,77,81,102,107,124,136,140,146,157 sstarts=3,17,85,103,112,126,131,138,142,146,158,171,177,182,208 lengths=14,4,18,9,14,4,4,4,4,12,12,4,4,8,5 u=0.810721,0.347956,-0.470806,0.583802,-0.540497,0.605836,-0.043665,-0.766022,-0.641330 t=-40,-23,93 segments=7-20,21-24,89-106,107-115,116-129,130-133,135-138,142-145,146-149,150-161,162-173,175-178,181-184,186-193,212-216 compnd=_INORGANIC_PYROPHOSPHATASE;>"   <A HREF=#alignment-1>1</A>:  3qu2-D  8.2  2.9  120   221   10 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=3qu2&u=0.810721,0.347956,-0.470806,0.583802,-0.540497,0.605836,-0.043665,-0.766022,-0.641330&t=-40,-23,93">PDB</A>  MOLECULE: INORGANIC PYROPHOSPHATASE;                                 

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=3qu2D Z-score=8.2</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ---LEEELLLLLLLLLLllLLLL-------------------------------------
Query ---VIFLDIDGVLLPVPrfTFGG-------------------------------------   20
ident        | ||||                                               
Sbjct klkAVLFDMDGVLFNSM--PYHSeawhqvmkthgldlsreeaymhegrtgastinivfqr   58
DSSP  lllEEEELLLLLLLLLH--HHHHhhhhhhhhhllllllhhhhhhlllllhhhhhhhhhhh


DSSP  ---------------------------LLLLHHHHHHHHHHHHHLllhhhLLEEELLHHh
Query ---------------------------GELSEQSVLILQQIVKGCggrekVSIILSSTWr   53
ident                             |        ||                     
Sbjct elgkeatqeeiesiyheksilfnsypeAERMPGAWELLQKVKSEG-----LTPMVVTGS-  112
DSSP  hllllllhhhhhhhhhhhhhhhhllllLLLLLLHHHHHHHHHHLL-----LEEEEELLL-


DSSP  HLHHHHHHHHHHHHhhhlllLLLE-EEEL---LLLLllllllllllllhhhhhHHHHhHH
Query NFPDQVRRLNQFIEkttgteVPAV-AGGT---PNGTpkttvvtyfpddpseqrLVRDrVD  109
ident        ||                                                   
Sbjct GQLSLLERLEHNFP------GMFHkELMVtafDVKY-----------------GKPN-PE  148
DSSP  LLLLHHHHHHHHLL------LLLLhHHEElllLLLL-----------------LLLL-LH


DSSP  HHHHHHHHLLlllhhHHLLLLEEEELL-LHHH--LHHHllLEEELLLL------------
Query EVKRWIHTHMqdypeAIGGRWFAIDDM-QLDV--DERMrgHFLKTETE------------  154
ident                        |                      |             
Sbjct PYLMALKKGG-----LKADEAVVIENApLGVEagHKAG-iFTIAVNTGpldgqvlldaga  202
DSSP  HHHHHHHHHL-----LLHHHEEEEELLhHHHHhhHHLL-lEEEEELLLlllhhhhhhlll


DSSP  ---lllLHHHL--------
Query ---tglTEGDV--------  162
ident                    
Sbjct dllfpsMQTLCdswdtiml  221
DSSP  leeellHHHHHhhhhhhll


</PRE>
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<H1>PF18143</H1>
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