Results: PF17659
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 4gnx-Z 13.1 3.7 263 433 18 PDB MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=4gnxZ Z-score=13.1
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DSSP lllllllllllllllllllllllllllllllllllllllllllhhhhhhhhhhlllllee Query sgesdqpqpgpshaglylehrerdqagvpggvirragsqrhrswiqtvieqitgsprqcv 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP ellllleeeeeeeeeeelllllllllllllleeeeeeeelllleeeeeelhhhhhhhhll Query tlsevvpvsvlavqrylledeprdtvpkpplycydvtisdgvyqekcyldpslnflvyqn 120 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP llllleeeeeeeeeeellllllllleeeeeeeeeeeellllllllllllhhhhlllllll Query ilkvgiemrisrvsclynekrlgqgilcidkvhcgepldvisvetpfrnraheekperpl 180 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP llllllllllllllllllhhhlllllllllllllllEELHHHHhhhHHHLlLLLEEEEEE Query rgskshylalwnnedpygdiwktnkqpeefnfnntkIISLSHLemtWHNRkNFPALLVRI 240 ident | | | | Sbjct ------------------------------------IYPIEGL---SPYQ-NRWTIKARV 20 DSSP ------------------------------------LLLHHHL---LLLL-LLLEEEEEE DSSP EEELLLEELLLlLLLLllLEEEEEEEELLLLEEEEEEELLHHHHHLLLLLLLLEEEEELL Query LHKSKLRYYGKpNKKMiePYQTYLEVADSSGMVSVIMWNALCPEWYKSLRVGLILLLQDY 300 ident || | | || | | | | Sbjct TSKSDIRHWSN-QRGE--GKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKA 77 DSSP EEELLLEELLL-LLLL--LEEEEEEEELLLLEEEEEEELHHHHHHLLLLLLLLEEEEELL DSSP EEEELLLLLLLlllllllllEEEEEEEEELLlllLLEEEEElhhHLLHhhLLLLLLLLLL Query SVKKSYPLRIQpdpvdpqmkLISTMEICLNLrdpPTNIVIIpekQLKSewKLPKLINRFI 360 ident | | || | | | | Sbjct RVNIAKKQFSN---------LQNEYEITFEN---STEIEEC---TDAT--DVPEVKYEFV 120 DSSP EEEELLHHHLL---------LLLLEEEEELL---LLEEEEL---LLLL--LLLLLLLLLL DSSP LHHHHLLLLLLLEEEEEEEEEEELLLEEEELLLlLLLEEEEEEEEEELLLLlLLEEEEEE Query TRSELDDMPENSICDVIGMLSFVGRVQRSKKKEnSEDFWSYRWIHITDGTSeQPFIVQLF 420 ident || | ||||| | | | | | | | Sbjct RINELESVEANQQCDVIGILDSYGELSEIVSKA-SQRPVQKRELTLVDQGN-RSVKLTLW 178 DSSP LHHHHHHLLLLLEEEEEEEEEEELLLEEEELLL-LLLEEEEEEEEEELLLL-LEEEEEEE DSSP LLLLHhHHLL---LLLLLEEEEEEEEEEEElllllLEEEEEEEEEEEEELLlllllhHHH Query STSQPeVFEN---IYPMTYFVCTQLKVVRNnsqvpKLLYLTTTNESRVLITghrgqpYTY 477 ident | || | | || Sbjct GKTAE-TFPTnagVDEKPVLAFKGVKVGDF-----GGRSLSMFSSSTMLIN------PDI 226 DSSP HHHHH-LHHHlllLLLLLEEEEEEEEEELL-----LLLEEEEEEEEEEEEL------LLL DSSP LhHHHHHHHHHHH-LLLLHhhhleelllLLLL-----------------lllllHHHHhl Query DtKAKKIIQWIKT-KTNLEakntviggyYPYP-----------------pvpetFSKYsr 519 ident | | Sbjct T-ESHVLRGWYDNdGAHAQ---fqpytnGGGAganmaerrtivqvkdenlgmseKPDY-- 280 DSSP H-HHHHHHHHHHHlHHHLL---llllllLLLLlllllllllhhhhhhlllllllLLEE-- DSSP LLLH-------------------------------------------------------- Query FIKA-------------------------------------------------------- 523 ident | Sbjct FNVRatvvyikqenlyytacasegcnkkvnldhennwrcekcdrsyatpeyryilstnva 340 DSSP EEEEeeeeeellllleeeelllllllllleellllleeelllleeellleeeeeeeeeee DSSP ------------------------------hhllllhhhhhhhhhlllllleeeeEEEEE Query ------------------------------esllttisevrkviedlqyreqkriAIQGI 553 ident Sbjct datgqmwlsgfnedatqligmsagelhklreesesefsaalhraanrmymfncraKMDTF 400 DSSP lllleeeeeeehhhhhhhhlllhhhhhhhhlllhhhhhhhhhhhlleeeeeeeeeEELLL DSSP EEeeeeelllllllllllllllllllllllllllllllllllllllllllllllllllll Query ITaikyipynhsaksapasetlqnasppstsqaaakeghyhergskrsqddrpmdslpmv 613 ident Sbjct ND--------------------------------------------tarvrytisraapv 416 DSSP LL--------------------------------------------llleeeeeeeeeel DSSP lllllllllLLLLllllllllllllllllllllllllllllllllllllllllllleeel Query lslcakrkiLQGPtanpvpvpqphssaqmkgnkpnipsrenstanatgkskriindrwes 673 ident Sbjct dfakagmelVDAI----------------------------------------------- 429 DSSP lhhhhhhhhHHHH----------------------------------------------- DSSP hhhhhhllllleeeeellllhhhlleellhhhhhhhhhhhllllllllllllllllhhhl Query qlwrdkkfslrdhlhyghvdpesiprkfilghekfltqqfnsqpakyvppegkppkldef 733 ident Sbjct ------------------------------------------------------------ 429 DSSP ------------------------------------------------------------ DSSP llllllleeeeeeellllleeeeeeelllllhhhhlllllllhhhhllllllllllllll Query qsarslghfevtilglnheiaidvaflpmyspedvetsqidtfltcmnyscvyppaapvs 793 ident Sbjct ------------------------------------------------------------ 429 DSSP ------------------------------------------------------------ DSSP lllllhhhhhhhhhhhhhllllleeeeeeeeeeeelleeeeeeeeel Query grvpdpkavagdivkaaadldrvhiigildicnlgnnkvevclqkiy 840 ident Sbjct -------------------------------------------raym 433 DSSP -------------------------------------------hlll
