Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7wpq-E 13.8 3.7 252 711 33 PDB MOLECULE: VON WILLEBRAND ANTIGEN 2;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7wpqE Z-score=13.8
back to top
DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct sstarcslfgsdfvntfdgsmysfagycsyllaggcqkrsfsiigdfqngkrvslsvylg 60 DSSP llllleeelllleeellllleeellllleeeeeellllllleeeeeelllleeeeeeell DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct effdihlfvngtvtqgdqrvsmpyaskglyleteagyyklsgeaygfvaridgsgnfqvl 120 DSSP llleeeelllllleelleellllllhhhlllleelleeeeellllleeeeellllleeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct lsdryfnktcglcgnfnifaeddfmtqegtltsdpydfanswalssgeqwcerasppsss 180 DSSP elhhhllllllllllllllllllllllllllllllllllllllllllllllllllllllh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct cnissgemqkglweqcqllkstsvfarchplvdpepfvalcektlcecagglecacpall 240 DSSP hhlllhhhhlllhhhhhhhhhlhhhlllllllllhhhhhhhlllllllllllhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct eyartcaqegmvlygwtdhsacspvcpagmeyrqcvspcartcqslhinemcqercvdgc 300 DSSP hhhhhhhllllllllllllllllllllllleellllllllllllllllllllllllllle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct scpegqlldeglcvestecpcvhsgkryppgtslsrdcntcicrnsqwicsneecpgecl 360 DSSP ellllllllllllllhhhlleeelleeelllleeelllleeeeelleeeellllllllle DSSP ---------------------------------------------------LLEEEEEEL Query ---------------------------------------------------TRSVTLQIY 9 ident ||||| Sbjct vtgqshfksfdnryftfsgicqyllardcqdhsfsivietvqcaddrdavcTRSVTVRLP 420 DSSP eellleeellllleeellllleeeeeellllllleeeeeeeellllllleeEEEEEEELL DSSP ---LEEEEEELllLLLEEELLEEELLLEEElLLEEEEEEL-LEEEEEELLLLEEEELLLL Query ---NHSLTLSArwPRKLQVDGVFVTLPFQLdSLLHAHLSG-ADVVVTTTSGLSLAFDGDS 65 ident | | || | || | | | | || Sbjct glhNSLVKLKH--GAGVAMDGQDVQLPLLK-GDLRIQHTVtASVRLSYGEDLQMDWDGRG 477 DSSP lllLLLEEELL--LLLLEELLEELLLLLLL-LLEEEEELLlLLEEEEELLLEELLLLLLL DSSP LEEEELLHHHLLLLLLLLLLLLLLLLLLLHHHL--------lLHHHHLLLlLLLLLLLll Query FVRLRVPAAYAGSLCGLCGNYNQDPADDLKAVG--------gKPAGWQVGgAQGCGECvs 117 ident ||| |||||||| || | Sbjct RLLVKLSPVYAGKTCGLCGNYNGNQGDDFLTPSglaeprvedFGNAWKLH-GDCQDLQ-- 534 DSSP LLLLEELHHHLLLLLLLLLLLLLLLLLLLEELLleelllhhhHHHHLLLL-LLLLLLL-- DSSP lLLLLLLL---HHHHHHHLLllLLHHHHLllLLLHHHLLLLLLHHHHHHHHHHHHHLLLL Query kPCPSPCT---PEQQESFGGpdACGVISAtdGPLAPCHGLVPPAQYFQGCLLDACQVQGH 174 ident | | || | || | | | | | | Sbjct -KQHSDPCalnPRMTRFSEE--ACAVLTS--PTFEACHRAVSPLPYLRNCRYDVCSCSDG 589 DSSP -LLLLLLLlllLLHHHHHHH--HHHHHLL--HHHHHHLLLLLLHHHHHHHHHHHLLLLLH DSSP HHHHHHHHHHHHHHHHHLLLLLlLLLLLLLLLLLLLLLEEEEEEEELLLLLLLLL-llll Query PGGLCPAVATYVAACQAAGAQLrEWRRPDFCPFQCPAHSHYELCGDSCPGSCPSL-sape 233 ident || | | | ||| | || | | || | || | | || Sbjct RECLCGALASYAAACAGRGVRV-AWREPGRCELNCPKGQVYLQCGTPCNLTCRSLsypde 648 DSSP HHHHHLLHHHHHHHHLLLLLLL-LLLLLLLLLLLLLLLLEEEEEELLLLLLHHHHhllll DSSP lLLLLEEEEEEELLLEEEE-llEEEEHHHLLEEELLeeelllleellllllllleELLL- Query gCESACREGCVCDAGFVLS-gdTCVPVGQCGCLHDDryyplgqtfypgpgcdslcRCRE- 291 ident | || ||| | | ||| || | | Sbjct eCNEACLEGCFCPPGLYMDergDCVPKAQCPCYYDG-------------------EIFQp 689 DSSP lLLLLLEEEEELLLLLEELlllLEELLLLLLEEELL-------------------EEELl DSSP ---------------------- Query ---------------------- 291 ident Sbjct edifsdhhtmcycedgfmhctm 711 DSSP llllllllleeeelllleeeel
