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<TITLE>Dali: PF16887</TITLE><A name=s001A>
<h1>Results: PF16887</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="VKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALIEKELVTENDKLTDAGFKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIVQSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYEQNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAE"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHLLLEEEEELLEEEEEEELLLLEEEEEEELLLLLEEEEEEEHHHHHHHHHHHLHHHHLLLLLLLLLEEELLHHHHHHHHHLLHHHEEEEEEEEEEELLLLLEEEEEEEEEELLEEEEEEHHHLEEEEELHHHHHHHHHHHLLLLLLLLLLLLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="220    4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   209   210   211   212   213   214   215   216   217   218   219   220   221   222   223 
">
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<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4w4iA sequence=naVELTVDNAWFIAEtiGAGTFPWVlaiTMPYsdaaqrgaFVDRQRDELTRMGLLSPQGVINPAVADWIKVVCFPDRWLDLRyvgpasadgacellRGIVALRTgtgkKTGNGVVALRNAQLVTFTAMDIDdprALVPILGVGLAHRPPARFDEFSLptrvGARADERLrsgvplgevvdylgipasarpvvesvFSGPRSYVEIVAGCNRdGRHTTTevGLSIVDTSAgrVLVSpsrafdgeWVSTFSPGTpfAIAVAIQTLTACLPD dssp=leEEEEHHHHHHHHHhlLLLLLLHHhllLLLLllhhhhhhHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHLLLEEEEEEeellllllllllleEEEEEELLllllLLLEEEEEEEELLEEEEEEEELLlhhHHHHHLLLLLLLLLLLLLLLEEEehhhHHHHHHHHhllllhhhhhhhhllllllhhhhhhhHLLLLEEEEEEEEEEElLEEEELllLEEEEELLLleEEEEeeelllllEEEEEEELLhhHHHHHHHHHHHLLLL qstarts=4,17,27,31,55,76,85,98,109,122,132,139,148,164,170,180,188,197 sstarts=2,17,28,40,61,96,108,120,134,146,153,161,195,212,220,231,243,254 lengths=13,8,4,21,21,8,12,11,12,7,4,8,16,6,9,4,9,8 u=-0.063990,0.230632,0.970935,0.900376,-0.406249,0.155838,0.430382,0.884178,-0.181660 t=28,-13,-4 segments=5-17,20-27,31-34,43-63,64-84,99-106,114-125,126-136,140-151,152-158,159-162,167-174,201-216,218-223,226-234,237-240,249-257,260-267 compnd=_ESX-3_SECRETION-ASSOCIATED_PROTEIN_ESPG3;>"   <A HREF=#alignment-1>1</A>:  4w4i-A 11.3  3.7  181   269    8 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4w4i&u=-0.063990,0.230632,0.970935,0.900376,-0.406249,0.155838,0.430382,0.884178,-0.181660&t=28,-13,-4">PDB</A>  MOLECULE: ESX-3 SECRETION-ASSOCIATED PROTEIN ESPG3;                  

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4w4iA Z-score=11.3</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  llllLLLLHHHHHHHHL--LLLLLLLL-llLLLL--------LHHHHHHHHHHLLLLLLL
Query vkriDYFSYEELTILGG--SKLPLVNF-elFDPS--------NFEEAKAALIEKELVTEN   49
ident                                 |                 |    |    
Sbjct --naVELTVDNAWFIAEtiGAGTFPWVlaiTMPYsdaaqrgaFVDRQRDELTRMGLLSPQ   58
DSSP  --leEEEEHHHHHHHHHhlLLLLLLHHhllLLLLllhhhhhhHHHHHHHHHHHHLLLLLL


DSSP  LLLlhhHHHHHHHHHHHHLLLEEEEEL--------------LEEEEEEE---lLLLEEEE
Query DKLtdaGFKVATLVREYISAIVNIRIN--------------DMYFAPFS---yEKDEYIL   92
ident          ||                                  |              
Sbjct GVI---NPAVADWIKVVCFPDRWLDLRyvgpasadgacellRGIVALRTgtgkKTGNGVV  115
DSSP  LLL---LHHHHHHHHHHHLLLEEEEEEeellllllllllleEEEEEELLllllLLLEEEE


DSSP  EEELLlLLEEEEEEEHH---HHHHHHHHHLHHhHLLLLLLlllEEEL-lhhHHHHHHHL-
Query LSRFKnNGFQIRIINKD---IAWWSIVQSYPLlMRQEKSNdwdFKQI-ddeTLENLNNE-  147
ident   |             |                                           
Sbjct ALRNA-QLVTFTAMDIDdprALVPILGVGLAH-RPPARFD---EFSLptrvGARADERLr  170
DSSP  EEEEL-LEEEEEEEELLlhhHHHHHLLLLLLL-LLLLLLL---LEEEehhhHHHHHHHHh


DSSP  ------------------------lHHHEEEEEEEEEEELL-LLLEEE--EEEEEEELL-
Query ------------------------sIDTIGRVLEIEIYNHQ-GDPQQS--LYNIYEQND-  179
ident                                  ||       |          |      
Sbjct sgvplgevvdylgipasarpvvesvFSGPRSYVEIVAGCNRdGRHTTTevGLSIVDTSAg  230
DSSP  llllhhhhhhhhllllllhhhhhhhHLLLLEEEEEEEEEEElLEEEELllLEEEEELLLl


DSSP  eEEEE----ehhhLEEEEELHH--HHHHHHHHhllllllllllllll
Query lLFIR----yplkDKVLNVHIG--VINTFIRElfgfdtdenhinkae  220
ident                          |   |                 
Sbjct rVLVSpsrafdgeWVSTFSPGTpfAIAVAIQT--------ltaclpd  269
DSSP  eEEEEeeelllllEEEEEEELLhhHHHHHHHH--------hhhllll


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<H1>PF16887</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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