Results: PF16062
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6omi-B 28.6 2.8 291 362 16 PDB MOLECULE: MAVL;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6omiB Z-score=28.6
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DSSP lhhhhhhhllllllllllllhhhllhhhhhhhhhhhHLLEEEEEHHHHHHHHHHHHHHH- Query dnfkaiseqspaefgidscrvkaqpedrsdrireqiASAYPVIHERTLLLFISFLEHKL- 59 ident | || Sbjct -----------------------------------nAAYQLLLSKETLNKILQYKQNLEk 25 DSSP -----------------------------------lLLLEEEELHHHHHHHHHHHHHHHh DSSP HHLL-------hhhhhHHLLlLHHHHHHHHHHLLLLEEE-LLLLeeellllleellLHHH Query TFGS-------eqekaIYKDmTVVDLVQRLLAKRCVWFF-GANDyyrtmqgnigneGFEA 111 ident | | | Sbjct GLATpgkffleelskqEKSI-DITTFTQLLIQSKKPQVFaESQV------------YHDG 72 DSSP LLLLllhhhhhhhlllLLLL-LHHHHHHHHHHLLLLLLLlLLLL------------LLLL DSSP LlllllllllllllLLLHHHHHHHLLLEEEEEEELLLLLLLLlllLLLLLHhhllLEEEE Query VgtpaekepltltsVLSYDEIKLSALLYVSCHSEFINNGSRVnggEVLQNKdtieREGVV 171 ident | | | | | Sbjct T-------------DWTLEEESILGDVSVNXPVTXYNDGGHGssfKNHPKP----ISGYL 115 DSSP L-------------LLLHHHHHHHLLLEEEEEEEEEELLLLLlllLEEEEE----EEEEE DSSP EEELLLLLLL--LLLLLHHHHEELlllllhhhlllllllllllllllhhhhhhhhhhhhh Query IGLIGARFER--PDVMEYQDIMITktqnteangygfdleqissetvtpasdlrriwrefy 229 ident || Sbjct AYVPGALLASgsGPTSDXKEVLDN------------------------------------ 139 DSSP EEEELLLLLLllLLLHHHHHHEEL------------------------------------ DSSP lllllllhhhllllllleeeellEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEE Query eeprdfiyadtpydttrfeevsqGIFDHQVMRKRYAISFDTLLLEAQDRAFKAGKPAYIH 289 ident | | | | | | | Sbjct -----------------------GKLNQDKLNALYERRLLPQLIHFNELARQNEKQAAIT 176 DSSP -----------------------LEELHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEEE DSSP ELLLLLLLLL--LLLLHHHHHHHHHHHHHHHHHHHHLLEEEEEELLL-LLLEelleeLLL Query VVGIGLGVWK--AARQQERTFLESFEGRLRALGERLSHIGVVHFSWF-HLACvgslhDGA 346 ident ||| | | | | | Sbjct IPGIGTGCFSgaYYDVIKPYVRNALIHILEKHKDSLPYIDIIHYDPYxGDEP-----AEK 231 DSSP EELLLLLLLLhhHLLLHHHHHHHHHHHHHHHLLLLLLLEEEEEEELLlLLLL-----EEE DSSP EEElllllllEEEEEELL-------LLLLLL-LLLL---LEEEEEEELLLLLLLLHHHHH Query IIPvdkhpqgGIRIRNSV-------RNPGDK-LTED---MLPVVTYAWDGNALPGNEFWA 395 ident | | | | | | ||| ||| | Sbjct KIG-------HXSFRVSPsgvvrgtTGQLDYpLGSNpdtHILVSIVAWDHFSWPGNDYWG 284 DSSP EEL-------LEEEEELLlllllllLLLLLLlLLLLlllEEEEEEEEELLLLLLLHHHHH DSSP LLLlLLHHHHHHHHLLHHHHLL---------------------------------llllL Query NMLiSTGDPAAACSTLISELQN---------------------------------phinV 422 ident | | | || Sbjct GAR-QTDDGVKAASTDTXGQVTgatgvydkkwgryxppesftkdrkgxsdwgdyvrengI 343 DSSP LLL-LHHHHHHHHLLLHHHHHHlllleeelllleeellhhhhllllllllhhhhhhhllL DSSP LLLLhhHLEEEElLLEEEeHHHHhhl Query HYMNgaNLHIASvEHGLLhVGDYarr 448 ident | | Sbjct VFNG--PVLALD-KSGKL-DTLE--- 362 DSSP LLLL--LEEEEL-LLLEE-LLLL---
