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<TITLE>Dali: PF16044</TITLE><A name=s001A>
<h1>Results: PF16044</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="jobid" VALUE=PF16044>
<input TYPE="hidden" NAME="query_sequence" VALUE="KSVIKFSHCHRDIFCFFVPDQCPECGESLSGKRLEEAPVSIPNPFSNGHKTPCAFLVASAEDRLLRDFDGQSDLHTGITNTNGVVYNYTCAGVQRETQGWERCICVPLVQPDMFSLISQWDQYLEKFSTAQMWDPLWQSFNEESHNCFSFTLMFINCVLATQSKRALSKDEFTHSFVLPRIKRASKYMMLCSQI"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLEEEEEELLEEEEELLLLLLLLLLLLLLLLLLHHHLLEEELLLLLLHHHLLLEEEEEELLLLLLLLLLLLLLEEEEEELLLLLEEEEELLEEEEELLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHLLHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHLHHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="194    3     4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196 
">
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=3ebqA sequence=nlyPVKLYVYDLSKGLARrlspimlgkqLEGIWHTSIVVHKDEFFFGSGGISSCPpggTLLGPPdSVVDVGsTEVTEEIFLEYLSSlgeSLFRGEAYNLFEHNCNTFSNEVAQFLTGrkIPSYITDLPSEVLSTPFGQALRPLL dssp=lleEEEEEEEELLLLHHHhhhhhhhlllLLLLEEEEEEELLEEEELLLLLLEEELlllLLLLLLlEEEEEEeELLLHHHHHHHHHHhhlLLLLHHHLLLLLLLHHHHHHHHHHHHHLllLLHHHHLHHHHHHLLHHHHHHLLLL qstarts=51,65,69,83,97,103,116,130,137,171 sstarts=3,14,28,41,58,65,72,89,94,119 lengths=11,4,13,14,6,6,14,5,23,4 u=0.118622,-0.675377,-0.727870,-0.972479,0.069024,-0.222533,0.200534,0.734236,-0.648602 t=69,23,26 segments=8-18,19-22,33-45,46-59,63-68,70-75,77-90,94-98,99-121,124-127 compnd=_MOLECULE:_PPPDE1_(PERMUTED_PAPAIN_FOLD_PEPTIDASES>"   <A HREF=#alignment-1>1</A>:  3ebq-A  7.6  2.9  100   144   12 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=3ebq&u=0.118622,-0.675377,-0.727870,-0.972479,0.069024,-0.222533,0.200534,0.734236,-0.648602&t=69,23,26">PDB</A>  MOLECULE: MOLECULE: PPPDE1 (PERMUTED PAPAIN FOLD PEPTIDASES          

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=3ebqA Z-score=7.6</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lleeeeeelleeeeellllllllllllllllllhhhlleeellllllhhhlLLEEEEEEL
Query ksvikfshchrdifcffvpdqcpecgeslsgkrleeapvsipnpfsnghktPCAFLVASA   60
ident                                                    |    |   
Sbjct ------------------------------------------------nlyPVKLYVYDL   12
DSSP  ------------------------------------------------lleEEEEEEEEL


DSSP  LLlllLLLL----------LLLLEEEEEELLLlLEEEEELLEEEEEL---LLLLLL-EEE
Query EDrllRDFD----------GQSDLHTGITNTNgVVYNYTCAGVQRET---QGWERC-ICV  106
ident                         || |             |                 |
Sbjct SK---GLARrlspimlgkqLEGIWHTSIVVHK-DEFFFGSGGISSCPpggTLLGPPdSVV   68
DSSP  LL---LHHHhhhhhhhlllLLLLEEEEEEELL-EEEELLLLLLEEELlllLLLLLLlEEE


DSSP  ELLllllhhhHHHHHHHHHHHHLL---HHHLLllLLLLLLLLLHHHHHHHHHHHHHHhll
Query PLVqpdmfslISQWDQYLEKFSTA---QMWDPlwQSFNEESHNCFSFTLMFINCVLAtqs  163
ident                                      |   |||  |             
Sbjct DVG------sTEVTEEIFLEYLSSlgeSLFRG--EAYNLFEHNCNTFSNEVAQFLTG---  117
DSSP  EEE------eELLLHHHHHHHHHHhhlLLLLH--HHLLLLLLLHHHHHHHHHHHHHL---


DSSP  lllllhhhHHHH--hlhhhhhhhhhhhhhhhhl
Query kralskdeFTHS--fvlprikraskymmlcsqi  194
ident                                  
Sbjct ------rkIPSYitdlpsevlstpfgqalrpll  144
DSSP  ------llLLHHhhlhhhhhhllhhhhhhllll


</PRE>
</PRE>
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<H1>PF16044</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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