Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7sx3-E 11.4 4.9 239 1611 89 PDB MOLECULE: SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN,ENHANCE
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7sx3E Z-score=11.4
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct plpiqtflwrqtsaflqyeascvsfervlvewelvqaalphvlhctatllsnrnvaetkl 60 DSSP llllhhhhhhhhhhhllllhhhhhhhhhhhllhhhhhhhhhhhhhhhhhhhhlllhhhhh DSSP ----lLLLL------------------------------------LLLHHHLL------- Query ----aNLPR------------------------------------SLTDSCIN------- 13 ident Sbjct lhtlhWMLLsmatvelfvflfaplvhrikeslviwqpmwehrqpgVSGFTALVtyfdvav 120 DSSP hhhhhHHHLlhhhhhhhhhhhhhhllllllllllhhhhhllllllLLLLLLLLlhhhhhh DSSP -------llllllllllllhhhlllllllllHHHHHHHHHHHLLLLLLHHHHHHHHHHHH Query -------ysyledtehidgtnnfvhkngmldLSVVLKAVYLVLNHDISSRICDVALNIVE 66 ident ||||||||||||||||||||||||||||| Sbjct lrcllqphwseegtqwslmyylqrlrhmleeLSVVLKAVYLVLNHDISSRICDVALNIVE 180 DSSP hhhhllllllhhhhhhhhhhhhhhhhhhhhlLHHHHHHHHHHHLLLLLHHHHHHHHHHHH DSSP HHHHLLLLLLhhhhhhhhhlllllllllllllllllllllllllllllllllllllllll Query CLLQLGVVPCveknrkksenkenetlekrpsegafqfkgvsgsstcgfggpavsgagdgg 126 ident |||||||||| Sbjct CLLQLGVVPC-------------------------------------------------- 190 DSSP HHHHHLLLLL-------------------------------------------------- DSSP llllllllllllllllllllllllllllllllllllllllLLLHHHHHHHHHHHHHHHhL Query geeggggdggggggdggggggggggpyekndknqekdestPVSNHRLALTMLIKIVKSlG 186 ident |||||||||||||||||| Sbjct ----------------------------------------PVSNHRLALTMLIKIVKS-L 209 DSSP ----------------------------------------LLLHHHHHHHHHHHHHLL-L DSSP LLLllllllllhhhhHHHHhLHHHHHHHHHHHHHL------------------------- Query CAYgcgeghrglsgdRLRHqVFRENAQNCLTKLYK------------------------- 221 ident ||||||||||||||| Sbjct GCA------------LRHQ-VFRENAQNCLTKLYKldkmqfrqtmrdyvnkdslnnvvdf 256 DSSP LLL------------LHHH-HHHHHHHHHHHHHHLllhhhhhhhhhhhhhhllhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 221 ident Sbjct lhallgfnvegiivsamfkslitrcastthelhspenlglycdirqlvqfikeahgnvfr 316 DSSP hhhhhlllhhhhhhhhhhhhhhhhhhllhhhhllhhhhhhhhhhhhhhhhhhhllllhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 221 ident Sbjct rvalsalldsvvnlgairqgmkrfqfllnccepgtipdasilaaaldleapvvaraalfl 376 DSSP hhhlhhhhlllllhhhhhhhhhhhhhhhllllllllllhhhhhhlllllllhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 221 ident Sbjct ecarfvhrcnrgnwpewqklqwnaaklfyqwgdaigvrlnelchcpfalkmaacqlllei 436 DSSP hhhhhhhhhhhlllllllhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 221 ident Sbjct ttflretfscnyhrnmswlhvmillcnqqsfihphcylhhsrscarlvraikllygdsgm 496 DSSP hhhhhhhlllllllllllhhhhhhhhhlllllllllhhhhhhhhhhhhhhhhhhlllhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 221 ident Sbjct lkyirlqvmslspaplsllikaapilteemygdiqpaawelllsmdehmagaaaamfllc 556 DSSP hhhhhhlllllllhhhhhhhhllllllhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhh DSSP -llLHHHHHHHHHHHHLLLLHHHHHHHHHHL----------------------------- Query -laVPEAVSDMLMSEFHHPETVQRLNAVLKF----------------------------- 251 ident |||||||||||||||||||||||||||| Sbjct avkVPEAVSDMLMSEFHHPETVQRLNAVLKFhtlwrfryqvwprmeegaqqifkipppsi 616 DSSP hhhLHHHHHHHHHHHHLLLLHHHHHHHHHHHhhhhhlllllhhhllllhhhhllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 251 ident Sbjct nftlpspvlgmpsvpmfdppwvpqcnlqqeeekkrlgreaslitaipitqeacyepppqa 676 DSSP llllllllllllllllllllllllllhhhhhhhhhhhhhlllhhhllhhhhhllllllll DSSP --lLHHHHLHHHHHHHLLLLLLLLLLLLHHHHHHHHHL---------LLHHHHHHLLLHH Query --nACICAAVLPIVHLMEDGEVREDGVAVSAVAQQVLW---------VLRHFLEKLTISN 300 ident ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct vfpACICAAVLPIVHLMEDGEVREDGVAVSAVAQQVLWncliedpstVLRHFLEKLTISN 736 DSSP lllHHHHLLHHHHHHHLLLLLLLLLLLLHHHHHHHHHHhhhhhlhhhHHHHHHHHHHHLL DSSP HHHHHHHHHHHHHHHHLLL-----LLLL-LHHHHHHHHHHLLLLLHHHHHHHHHHHHHHH Query RQDELMYMLRKLLLNIGDF-----PSLF-YLVGLIMYFVRTPCEWGMDAISATLTFLWEV 354 ident ||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct RQDELMYMLRKLLLNIGDFpaqtsHILFnYLVGLIMYFVRTPCEWGMDAISATLTFLWEV 796 DSSP LHHHHHHHHHHHHHHHLLLlhhhhHHHHhHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHH DSSP HLLL----------------LLLLLLLL-------------------------------- Query VGYV----------------CEVKLLVT-------------------------------- 366 ident |||| |||||||| Sbjct VGYVeglffkdlkqtmkkeqCEVKLLVTasmpgtktlvvhgqnecdiptqlpvhedtqfe 856 DSSP HLLLllllhhhhhhhhhhhlLLLLLLLLllllllleeeeelllllllleeeellllllhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 366 ident Sbjct allkecleffnipesqsthyflmdkrwnlihynktyvrdiypfrrsvspqlnlvhmhpek 916 DSSP hhhhhhhhhhlllhhhllleeeeelllleellllllhhhhllllllllleeeeeellhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 366 ident Sbjct gqeliqkqvftrkleevgrvlflisltqkiptahkqshvsmlqedllrlpsfprsaidae 976 DSSP hhhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhhhhlllhhhhhhlll DSSP -------------------------lLLLLL----------------------------- Query -------------------------aSMPGT----------------------------- 372 ident Sbjct fslfsdpqagkelfgldtlqkslwiqLLEEMflgmpsefpwgdeimlflnvfngalilhp 1036 DSSP hhhhlllllhhhhhhhhhhhhhhhhhHHHHHhhlllllllllllhhhhhhhhhhhhhhll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct edsallrqyaatvintavhfnhlfslsgyqwilptmlqvysdyesnpqlrqaiefachqf 1096 DSSP llhhhhhhhhhhhhhhhhhlhhhhllllllllhhhhhhhhhhllllhhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct yilhrkpfvlqlfasvapllefkgvsaqclfdllqslegettdildilelvkaekplksl 1156 DSSP hhhhhhhhhhhhhhhhhhhlllllllhhhhhhhhhhhhllllllllhhhhllllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct dfcydltfsiseaiklcvtvvayapesfrslqmlmvlealvpcylqklkrqtsqvetvpa 1216 DSSP lllllllllhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct areeiaataalatslqallysvevltrpmelderiareefrrpresllnictefykhcgp 1276 DSSP hhhhhhhhhhhhhhhhhhhhhlhhhhllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct rlkilqnlaialelldvkshmrlaeiahsllklapydtqtmesrglrryimemlpitdwt 1336 DSSP hhhhhhhlllllllllhhhhhhhhhhhhhhhhhllllhhhhllhhhhhhhhhllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct aeavrpalililkrldrmfnkihkmptlrrqvewepasnliegvcltlqrqpiisflphl 1396 DSSP llllhhhhhhhhhhhhhhhhhhhhlhhhhhhlllhhhhhhhhhhhhhhhhlhhhhhllhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct rslinvcvnlvmlspplpfstavvrlvalqiqalkedfplshvispftnqerregmllnl 1456 DSSP hhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhllllllhhhhhhhhlllllhhhhhhhl DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct lipfvltvgpwleqpevqlllqtvinvllpplaestsqaaylalkvilvcferqlgsqwy 1516 DSSP lhhhhhhllllllhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhllllhhhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 372 ident Sbjct wlslqvkemalrkvgglalwdfldfivrtripifvllrpfiqckllaqpaenheelsarq 1576 DSSP hhhhhlhhhhhllllllhhhhhhhhhhhhllllhhhhhhhllhhhhlllllllhhhllhh DSSP ------------------------------lllll Query ------------------------------ktlvv 377 ident Sbjct hiadqlerrfiprplckssliaefnselkilkeav 1611 DSSP hhhhhlllllllllllhhhhhhhhhhhhhhhhhhl
