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<TITLE>Dali: PF15749</TITLE><A name=s001A>
<h1>Results: PF15749</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=1gh9A sequence=myiIFRCDCGRALYSREGaKTRKCvCGRTVNVKDrrIFGRaDDFEEASELVRKLQEEKYGSCHFTNPSKRE dssp=leeEEEELLLLLEEEELLlLEEEElLLEEEELLLllLLLLlLLHHHHHHHHHHHLLLLLLLLLLLLLLLLL qstarts=0,6,18,25,34,38,56,62 sstarts=3,8,19,25,36,41,57,61 lengths=5,10,5,9,4,16,4,5 u=-0.079502,-0.996773,-0.011106,-0.367056,0.039631,-0.929354,0.926795,-0.069809,-0.369022 t=-4,6,-0 segments=4-8,9-18,20-24,26-34,37-40,42-57,58-61,62-66 compnd=_8.3_KDA_PROTEIN_(GENE_MTH1184);>"   <A HREF=#alignment-1>1</A>:  1gh9-A  2.9  4.6   58    71   17 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=1gh9&u=-0.079502,-0.996773,-0.011106,-0.367056,0.039631,-0.929354,0.926795,-0.069809,-0.369022&t=-4,6,-0">PDB</A>  MOLECULE: 8.3 KDA PROTEIN (GENE MTH1184);                            

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=1gh9A Z-score=2.9</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ---LEELLlLLLEELLLLLllLEEELllLLLEEELLL--LLLL-LLLLHHHHHHHHHHHH
Query ---VLRCCsCHIFQAHQVKksLKWTCkaCGEKQSFVR--AYGE-GSGADCRRHVQKLNLL   54
ident      ||  |               |  ||           |           | ||   
Sbjct myiIFRCD-CGRALYSREG-aKTRKC-vCGRTVNVKDrrIFGRaDDFEEASELVRKLQEE   57
DSSP  leeEEEEL-LLLLEEEELL-lLEEEE-lLLEEEELLLllLLLLlLLHHHHHHHHHHHLLL


DSSP  hhHHHHhhHHHHHhhhhlllllllllllllllllllllllllllllll
Query qgQVSElsLRSVEeavngseeenagplqaeagsqqapskplesrwlky  102
ident                                                 
Sbjct --KYGS--CHFTN------------------------------pskre   71
DSSP  --LLLL--LLLLL------------------------------lllll


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<H1>PF15749</H1>
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