Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
PF15479
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***[/var/www/cgi-bin/sans/fasta36] Query sequence length <= 0: @***
Skylign error: {"error":{"hmmbuild":"Uploaded data was not a valid multiple sequence alignment or HMM.\n"}}
% Total % Received % Xferd Average Speed Time Time Time Current
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0 525 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
102 617 0 92 105 525 1312 7490 --:--:-- --:--:-- --:--:-- 7835
***[/var/www/cgi-bin/sans/fasta36] Query sequence length <= 0: @***
Skylign error: {"error":{"hmmbuild":"Uploaded data was not a valid multiple sequence alignment or HMM.\n"}}
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 525 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
102 617 0 92 105 525 1062 6062 --:--:-- --:--:-- --:--:-- 6250