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<TITLE>Dali: PF15474</TITLE><A name=s001A>
<h1>Results: PF15474</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="NNCKGSFLCPMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLNLQCSACGTRFFNNDNENTRCYVKLNYCYPDC"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLLLLLHHHHLLLLLLLHHHHLLLLLLLEELLLEEEEELLEEEEEEEELLLLLEEHHHHHHHHHHHHHHLLLLEEEEEELLLLLLEEEEEEEELLLLL"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=1kptA sequence=lgINCRGSSQCGLSGGNLMVRIRDQAcgNQGQTWCPGERrAKVCgtgnSISAYVQSTNNCISGTEACRHLTNLVNHgCRVCGSDPLYAGndvsRGQLTVNYVNSC dssp=llLLLLLLHHHHHLLLLHHHHHHHHHhhLLLLEELLLLLlEEEEllllEEEEEEELLLLLEEHHHHHHHHHHHHHHlLLLLEEEELLLLllhhHLEEEEEEELLL qstarts=0,14,26,37,41,52,71,87 sstarts=2,14,28,40,48,57,77,93 lengths=12,12,11,4,9,19,12,12 u=0.530204,-0.846268,0.052092,-0.005741,-0.065021,-0.997867,0.847850,0.528774,-0.039333 t=12,36,-56 segments=3-14,15-26,29-39,41-44,49-57,58-76,78-89,94-105 compnd=_KP4_TOXIN;>"   <A HREF=#alignment-1>1</A>:  1kpt-A 10.2  2.8   91   105   19 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=1kpt&u=0.530204,-0.846268,0.052092,-0.005741,-0.065021,-0.997867,0.847850,0.528774,-0.039333&t=12,36,-56">PDB</A>  MOLECULE: KP4 TOXIN;                                                 

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=1kptA Z-score=10.2</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  --LLLLLLLLHHHHllLLLLLHHHHLLL--LLLLEELLLEE-EEEL----LEEEEEEEEl
Query --NNCKGSFLCPMLrgENRACPNAYMKY--NRSLIYHGYSS-YTAS----SCTAIYECEg   51
ident    || ||  |                   |                   |  |      
Sbjct lgINCRGSSQCGLS--GGNLMVRIRDQAcgNQGQTWCPGERrAKVCgtgnSISAYVQST-   57
DSSP  llLLLLLLHHHHHL--LLLHHHHHHHHHhhLLLLEELLLLLlEEEEllllEEEEEEELL-


DSSP  lLLLEEHHHHHHHHHHHHHH-LLLLEEEEEELLllllEEEEEEEELLLLl
Query dYPARTGNEIIDEFDQLNLQ-CSACGTRFFNNDnentRCYVKLNYCYPDc  100
ident       | |       |    |  ||           |     ||     
Sbjct -NNCISGTEACRHLTNLVNHgCRVCGSDPLYAGndvsRGQLTVNYVNSC-  105
DSSP  -LLLEEHHHHHHHHHHHHHHlLLLLEEEELLLLllhhHLEEEEEEELLL-


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<H1>PF15474</H1>
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