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<TITLE>Dali: PF15094</TITLE><A name=s001A>
<h1>Results: PF15094</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="KCPAVLAPPNREYIQCDSDSIQVTREIPVDNWNNELDWSLALRGSLVVALEDSSLIQINVEMHKPNITVQGRRDTILSPVQVFASEGHFLPLKLVSGNYAYSMEATCPNGNTSSSNETVLHIYKRRMGLTKRGGYQNETLSVSSVMVEQTDTFSWTETTDFVQLIIPTSYIQQNKECLSQTGEKLQQNFYKIDAVLTFKETNHKMHWTMENTSPC"> 
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<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6gf8B sequence=PALLQYHYDCGDFGMQLLAYPTRGRTVHFKVLdefgTRFEVANCSicMHWLNTGeDGGLIFSAGYEGChVLVKDGRYVLRVQLEEmllsgvVAASYEVQMTCPRP dssp=LLLLEEEEEELLLEEEEEEELLLLLEEEEEEEllllLEEELLLLLllLEEEEELlLLLEEEEEELLLLlLEEELLEEEEEEEEEEelllllEEEEEEEEEEELLL qstarts=5,10,26,34,43,52,56,63,76,85,96 sstarts=0,4,19,23,36,41,47,55,69,74,91 lengths=4,15,4,9,5,4,7,13,5,11,13 u=-0.848223,0.023594,0.529114,0.287434,-0.818589,0.497287,0.444859,0.573895,0.687564 t=14,-24,13 segments=23-26,27-41,42-45,46-54,59-63,64-67,70-76,78-90,92-96,97-107,114-126 compnd=_ZONA_PELLUCIDA_SPERM-BINDING_PROTEIN_1,ZONA_PELLU>"   <A HREF=#alignment-1>1</A>:  6gf8-B  5.6  3.1   90   105   12 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6gf8&u=-0.848223,0.023594,0.529114,0.287434,-0.818589,0.497287,0.444859,0.573895,0.687564&t=14,-24,13">PDB</A>  MOLECULE: ZONA PELLUCIDA SPERM-BINDING PROTEIN 1,ZONA PELLU          

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6gf8B Z-score=5.6</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllLLLLlEEEEEELLLEEEEEEeLLLLllllLLLLEEEEL----LLEEEehhhHHHH
Query kcpavLAPPnREYIQCDSDSIQVTReIPVDnwnnELDWSLALR----GSLVValedSSLI   56
ident       |        |     |     |                       |        
Sbjct -----PALL-QYHYDCGDFGMQLLA-YPTR----GRTVHFKVLdefgTRFEV----ANCS   45
DSSP  -----LLLL-EEEEEELLLEEEEEE-ELLL----LLEEEEEEEllllLEEEL----LLLL


DSSP  --LEEEEEE-LLEEEEEEEHHHH-LEEEEelleEEEEELEEEEE------LLEEEELLEE
Query --QINVEMH-KPNITVQGRRDTI-LSPVQvfasEGHFLPLKLVS------GNYAYSMEAT  106
ident                                      |   |            |    |
Sbjct icMHWLNTGeDGGLIFSAGYEGChVLVKD----GRYVLRVQLEEmllsgvVAASYEVQMT  101
DSSP  llLEEEEELlLLLEEEEEELLLLlLEEEL----LEEEEEEEEEEelllllEEEEEEEEEE


DSSP  EELllllllleeeeeeelllllleelllllllllleeeeeelllllleeeellleeeeee
Query CPNgntsssnetvlhiykrrmgltkrggyqnetlsvssvmveqtdtfswtettdfvqlii  166
ident ||                                                          
Sbjct CPR---------------------------------------------------------  104
DSSP  ELL---------------------------------------------------------


DSSP  ehhhlleeeeeellllleeeeeeeeeeeeeeelllllleeeeeeeelll
Query ptsyiqqnkeclsqtgeklqqnfykidavltfketnhkmhwtmentspc  215
ident                                                  
Sbjct ------------------------------------------------p  105
DSSP  ------------------------------------------------l


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<H1>PF15094</H1>
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<H1>Dali logos </H1>
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