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<TITLE>Dali: PF15083</TITLE><A name=s001A>
<h1>Results: PF15083</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="pdbresnos" VALUE="89   69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=1lpbA sequence=giiINLDEGELCLNSAQCKSNCCQHDTILSLSRCALKAREnsecsaftlygvyykcpcergltcegdkSLVGsiTNTNFGICHNV dssp=lllLLLLLLLLLLLHHHLLLLLEELLLLLLLLEELLLLLLlleeelllllleelllllllleeeelllLHHHhhHLLLEEEEEEL qstarts=9,59,63 sstarts=3,68,74 lengths=37,4,5 u=0.472530,0.717620,-0.511602,-0.876463,0.321817,-0.358116,-0.092349,0.617620,0.781036 t=2,-0,-29 segments=9-45,74-77,80-84 compnd=_COLIPASE;>"   <A HREF=#alignment-1>1</A>:  1lpb-A  3.2  3.6   46    85   22 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=1lpb&u=0.472530,0.717620,-0.511602,-0.876463,0.321817,-0.358116,-0.092349,0.617620,0.781036&t=2,-0,-29">PDB</A>  MOLECULE: COLIPASE;                                                  

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=1lpbA Z-score=3.2</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllllllLLLLLLLLLLLHHHLLLLLEEELLLLLLEEELLLLLL--------------
Query qtvflqcvpWRKPNGYLCEEKTECHSNCCIRTSNNPDKFCSAKSIF--------------   46
ident               | ||     | ||||          |  |                 
Sbjct ------giiINLDEGELCLNSAQCKSNCCQHDTILSLSRCALKAREnsecsaftlygvyy   54
DSSP  ------lllLLLLLLLLLLLHHHLLLLLEELLLLLLLLEELLLLLLlleeelllllleel


DSSP  -lllllllllllllLLLH--HHLLLlleelllllllleelllllll
Query -lqcvswrkpegevCQTH--SECWSlcclplsenslphctkrtgll   89
ident                                               
Sbjct kcpcergltcegdkSLVGsiTNTNF---------------gichnv   85
DSSP  llllllleeeelllLHHHhhHLLLE---------------eeeeel


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<H1>PF15083</H1>
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<H1>Dali logos </H1>
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