Results: PF15051
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 5yh3-A 18.3 2.5 225 438 18 PDB MOLECULE: PSEUDOKINASE FAM20A;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=5yh3A Z-score=18.3
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct ssklqalfahplynvpeeppllgaedsllasqealryyrrkvarwnrrhkmyreqmnlts 60 DSSP llhhhhhhllllllllllllllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhlllll DSSP ---------------llllllllllllLLLHHHHHHHHHHHHLLEEEEEELLL------- Query ---------------sniriysesapsWLSKDDIRRMRLLADSAVAGLRPVSS------- 38 ident | Sbjct ldpplqlrleaswvqfhlginrhglysRSSPVVSKLLQDMRHFPTISADYSQDekallga 120 DSSP lllllllllllhhhhhhllllllllllLLLHHHHHHHHHHHHLLEEEEELLLLlllllll DSSP -----------LLLLEEEEELLlllllllllllLLEEEELLLL----------------- Query -----------RSGARLLVLEGgapgavlrcgpSPCGLLKQPL----------------- 70 ident | | Sbjct cdctqivkpsgVHLKLVLRFSD-----------FGKAMFKPMRqqrdeetpvdffyfidf 169 DSSP lllllllllllLLLLEEEEELL-----------LLEEEEEELLllllllllllllhhhll DSSP --LLHHHHHHHHHHHLLLLLLLLEEEEELLLL---------------------------- Query --DMSEVFAFHLDRILGLNRTLPSVSRKAEFI---------------------------- 100 ident | |||||||| | | | | Sbjct qrHNAEIAAFHLDRILDFRRVPPTVGRIVNVTkeilevtkneilqsvffvspasnvcffa 229 DSSP llHHHHHHHHHHHHHLLLLLLLLEEEEEEELLlllhhhlllhhhhhlleellllleeell DSSP ---------------HHHLEEEEEELLL----LLLLlllllllLLLLLH----------- Query ---------------QDGRPCPIILWDA----SLSSasndthsSVKLTW----------- 130 ident || | Sbjct kcpymckteyavcgkPHLLEGSLSAFLPslnlAPRL-------SVPNPWirsytlagkee 282 DSSP hhhhhhllllleellLLEEEEEEEELLLllllLLEE-------EEELLLlllllllllll DSSP -----hHHHHHHHH--LLLHhhllllhhhlllllLHHHHHHHHHHHHHHLLLLLllllll Query -----gTYQQLLKQ--KCWQngrvpkpesgcteiHHHEWSKMALFDFLLQIYNRldtncc 183 ident || |||| | Sbjct wevnplYCDTVKQIypYNNS-------------qRLLNVIDMAIFDFLIGNMDR------ 323 DSSP llllllHHHHHLLLllHHHL-------------lHHHHHHHHHHHHHHHLLLLL------ DSSP llllllllhhhhlllhhhhllhhhlllLLLEEELLEE--EEEELLLL-LLLLLLLHhhLL Query gfrprkedacvqnglrpkcddqgsaalAHIIQRKHDP--RHLVFIDN-KGFFDRSEdnLN 240 ident | | || || | Sbjct ---------------------------HHYEMFTKFGddGFLIHLDNaRGFGRHSH--DE 354 DSSP ---------------------------LEEEEEHHHLllLLEELLLLlLLLLLLLL--LL DSSP HHHHL---LLLEE---EHHHHHHHHLL--LHHHHHHHHHLLLhHHHHhllhhhhHHHHHH Query FKLLE---GIKEF---PASAVSVLKSQ--HLRQKLLQSLFLDkVYWEsqggrqgIEKLID 292 ident | | | || | | Sbjct ISILSplsQCCMIkkkTLLHLQLLAQAdyRLSDVMRESLLED-QLSP-----vlTEPHLL 408 DSSP HHHHHhhhHHLLEehhHHHHHHHLLLHhhLHHHHHHHHHHHL-LLLL-----llLHHHHH DSSP HHHHHHHHHHHHHHHLL------lEEELll Query VIEHRAKILITYINAHG------vKVLPmn 316 ident | Sbjct ALDRRLQTILRTVEGCIvahgqqsVIVDgp 438 DSSP HHHHHHHHHHHHHHHHHhhhhhhhLEELll
