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<TITLE>Dali: PF15016</TITLE><A name=s001A>
<h1>Results: PF15016</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="ILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWHLSSSAEKKQVDQGLSFGWCRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRG"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLEEEEEEELLLEEEEEELLLEEEEEELLLLEEEEELLLLLLLLLLLLLLLLLLLEEEEELLLLLEEEEELLLLHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="92  451   452   453   454   455   456   457   458   459   460   461   462   463   464   465   466   467   468   469   470   471   472   473   474   475   476   477   478   479   480   481   482   483   484   485   486   487   488   489   490   491   492   493   494   495   496   497   498   499   500   501   502   503   504   505   506   507   508   509   510   511   512   513   514   515   516   517   518   519   520   521   522   523   524   525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540   541   542 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4x9vA sequence=chlsdmlqqlhsvnaskpserglvrqeeaedpaciPIFWVSKWVDYsDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPnSLMKKITLLKYFRNYMSEHLLKAGANITARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRS dssp=llhhhhhhhhhhhhhllllllllllhhhhllhhhlLLLLEEEEEEElLLLEEEEEELLLLEEEEELLLLEEEELLLLLEEEEELLLLLEEEEELLLLLhHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEEEEEELLLEEEEEELLLLEEEEELLLLLEEEEELLLLEEEEELLLLLEEEEEHHHHHHHLLLHHHHHHHHHHHHHHHHHHHLLL qstarts=0,11,54,77 sstarts=35,47,75,99 lengths=11,28,23,15 u=-0.017428,-0.825671,0.563883,0.079829,0.561019,0.823945,-0.996656,0.059374,0.056135 t=-19,34,10 segments=407-417,419-446,447-469,471-485 compnd=_SERINE/THREONINE-PROTEIN_KINASE_PLK1;>"   <A HREF=#alignment-1>1</A>:  4x9v-A 11.8  1.6   77   217   13 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4x9v&u=-0.017428,-0.825671,0.563883,0.079829,0.561019,0.823945,-0.996656,0.059374,0.056135&t=-19,34,10">PDB</A>  MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1;                      

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4x9vA Z-score=11.8</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  -----------------------------------LLLLEEEEEEE-LLLEEEEEELLLE
Query -----------------------------------ILPVLLKESLI-PGVGRFLAYSDDK   24
ident                                          |        |      |  
Sbjct chlsdmlqqlhsvnaskpserglvrqeeaedpaciPIFWVSKWVDYsDKYGLGYQLCDNS   60
DSSP  llhhhhhhhhhhhhhllllllllllhhhhllhhhlLLLLEEEEEEElLLLEEEEEELLLL


DSSP  EEEEELLLLEEEEELlllllllllllllllLLLEEEEELLLLLEEEEELLLLH-HHHHHH
Query VHAVFLDGVTVTLNWhlsssaekkqvdqglSFGWCRLTFPDGQDQLIPTEHPG-AYERYV   83
ident |   | |     |                           ||                  
Sbjct VGVLFNDSTRLILYN---------------DGDSLQYIERDGTESYLTVSSHPnSLMKKI  105
DSSP  EEEEELLLLEEEELL---------------LLLEEEEELLLLLEEEEELLLLLhHHHHHH


DSSP  HHHHHHHHL---------------------------------------------------
Query TSVISWCRG---------------------------------------------------   92
ident |                                                           
Sbjct TLLKYFRNYmsehllkaganitarlpylrtwfrtrsaiilhlsngsvqinffqdhtklil  165
DSSP  HHHHHHHHHhhhllllllllllllllleeeeeellleeeeeelllleeeeellllleeee


DSSP  ----------------------------------------------------
Query ----------------------------------------------------   92
ident                                                     
Sbjct cplmaavtyidekrdfrtyrlslleeygcckelasrlryartmvdkllssrs  217
DSSP  elllleeeeellllleeeeehhhhhhhlllhhhhhhhhhhhhhhhhhhhlll


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<H1>PF15016</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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