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<TITLE>Dali: PF14976</TITLE><A name=s001A>
<h1>Results: PF14976</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="NCTFKDRCVSILCCKFCKQVLSSRGMKAVLLADTDIDLYSTDIPPTNTVDFIGRCYFTGIHKCKLKDIACLKCGNIVGYHVIVPCSSCLLSCNNGHFWMFHSQAVYGINRLDSTGVNFLLWGNLPETEECTDEEMLEISAEEYIR"> 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5hj0C sequence=QPSVFQCKKCFQIVGDSnawvISHREYLSFTLSDAVENSVRVEDTFKRSDDGLCVYSELSCTRCNEVIGKVYNSTPIYLDdirdMYTFSMDKLQAYQLGN dssp=LLEEEEELLLLLEEEELlleeEEELLLLEEEELLLLLLLEEELLLLEELLLLLLEEEEEEELLLLLEEEEEEEELLHHHHhhllLEEEEHHHEEEEELLL qstarts=7,26,34,96 sstarts=0,21,25,84 lengths=17,4,55,16 u=-0.130705,-0.797754,0.588646,-0.776692,-0.286617,-0.560893,0.616171,-0.530508,-0.582147 t=3,58,-12 segments=19-35,40-43,44-98,103-118 compnd=_KINETOCHORE_PROTEIN_MIS18;>"   <A HREF=#alignment-1>1</A>:  5hj0-C 10.0  2.3   92   100   13 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5hj0&u=-0.130705,-0.797754,0.588646,-0.776692,-0.286617,-0.560893,0.616171,-0.530508,-0.582147&t=3,58,-12">PDB</A>  MOLECULE: KINETOCHORE PROTEIN MIS18;                                 

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5hj0C Z-score=10.0</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllllLLEEEEELLLLLEEEEE--eeEEEElleeEEEEEEELLLLLLLEEELLLLEEL
Query nctfkdrCVSILCCKFCKQVLSSR--gmKAVLladtDIDLYSTDIPPTNTVDFIGRCYFT   58
ident          |   || | |                             | |         
Sbjct -------QPSVFQCKKCFQIVGDSnawvISHR----EYLSFTLSDAVENSVRVEDTFKRS   49
DSSP  -------LLEEEEELLLLLEEEELlleeEEEL----LLLEEEELLLLLLLEEELLLLEEL


DSSP  LLLLLEEEEEEELLLLLEEEEEEEELLHHHHhllllllLEEEELLLEEEEELLLllllll
Query GIHKCKLKDIACLKCGNIVGYHVIVPCSSCLlscnnghFWMFHSQAVYGINRLDstgvnf  118
ident     |      |  |    |                     |                  
Sbjct DDGLCVYSELSCTRCNEVIGKVYNSTPIYLD---dirdMYTFSMDKLQAYQLGN------  100
DSSP  LLLLLEEEEEEELLLLLEEEEEEEELLHHHH---hhllLEEEEHHHEEEEELLL------


DSSP  llhhhllllllllllllllllllllll
Query llwgnlpeteectdeemleisaeeyir  145
ident                            
Sbjct ---------------------------  100
DSSP  ---------------------------


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<H1>PF14976</H1>
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<H1>Dali logos </H1>
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