Content-type: text/html

<TITLE>Dali: PF14923</TITLE><A name=s001A>
<h1>Results: PF14923</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

<form NAME="optionform" METHOD="POST" TARGET="_blank"/>
<input TYPE="hidden" NAME="title" VALUE="PF14923">
<input TYPE="hidden" NAME="jobid" VALUE=PF14923>
<input TYPE="hidden" NAME="query_sequence" VALUE="ALWSQYWTMLWAACAQSLDLRVGPWGDPKAVAQQLSQALCQASLPQECEKELLSLCHSLFHRSLVCSWDQGFCQALGSAVGGQSSPASPSTAELLQRLFPPLLDILRQPRPELSLCQPAGPTPVALGLCTLQTTLLWFLGKAQQHLAAWAPGPFLLLIQKDLPPLLHAVEALSSLASEAAFSLEVEQQLGLEIQKLTARMQLLPKESLSLFFQECHKQATQGFKLHMPRGGYWRLRLCPEHPSDPSEYARVVVYTVLEPVLQGLRGLPPEAQAPALSQALTATLGAWLDHILTHGIRFSLQGALQLKQDFGVVREVLEQEQWGLSPELRQTLLSLSIFQQLDGALLCLLQQPLPKNPVQRRPHRCCFCNEVQTIELPTSSLNSLESLAPPLRPGVSPAQNTHLLSTLGGGGRGGGGGGPSPEAYLAGNQQAWL"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHLLHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHLHHHLLLHHHHHHHHLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="433  278   279   280   281   282   283   284   285   286   287   288   289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   433   434   435   436   437   438   439   440   441   442   443   444   445   446   447   448   449   450   451   452   453   454   455   456   457   458   459   460   461   462   463   464   465   466   467   468   469   470   471   472   473   474   475   476   477   478   479   480   481   482   483   484   485   486   487   488   489   490   491   492   493   494   495   496   497   498   499   500   501   502   503   504   505   506   507   508   509   510   511   512   513   514   515   516   517   518   519   520   521   522   523   524   525   526   527   528   529   530   531   532   533   534   535   536   537   538   539   540   541   542   543   544   545   546   547   548   549   550   551   552   553   554   555   556   557   558   559   560   561   562   563   564   565   566   567   568   569   570   571   572   573   574   575   576   577   578   579   580   581   582   583   584   585   586   587   588   589   590   591   592   593   594   595   596   597   598   599   600   601   602   603   604   605   606   607   608   609   610   611   612   613   614   615   616   617   618   619   620   621   622   623   624   625   626   627   628   629   630   631   632   633   634   635   636   637   638   639   640   641   642   643   644   645   646   647   648   649   650   651   652   653   654   655   656   657   658   659   660   661   662   663   664   665   666   667   668   669   670   671   672   673   674   675   676   677   678   679   680   681   682   683   684   685   686   687   688   689   690   691   692   693   694   695   696   697   698   699   700   701   702   703   704   705   706   707   708   709   710 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5h11A sequence=gplgsqliqeftaaqrrgeigrmrevaavllhfkgyahcvdvyikqcqegaymrndvfediailcqrvnkqvgevfcspetvmaKLIQSIFENKiqAHVKERLDETRNSDVEQYLKNLYDLYTRTTalaakltdynlgsdkhtflsklIKNIFSCYLESYIDMERQYLQNRSGMILQRYYDSKNHqkridthgetLLSQEVVVnLLQETRHAFERCnklSDPAdlpknafSIFLILVeYLCVdHIDYALEIGLSAIPSadakNANLYFLDVVQQANTIFHLFDKQFNdHLMPLISSSPKLTECLHKKKEVIEQMEVKLDTGIDRTLNCMIGQMKYILTTEQKKTDFKPeDENNVMIQYTTACSKVCAYVGKQVERVRRsMDGKNVDTVLTELGVRFHRLIHEHLQQFSYSSMGGMLAICDVAEYRRSAKDfRVPLVlQLFDTLHALCNLLVVAPDnlkqvcsgEQLTnLDRNLLHAFVQLRVDYRSARLGRHFS dssp=llllhhhhhhhhhhhhlllllhhhhhhhhhlllllhhhhhhhhhhhhhhlllllllhhhhhhhhhhhhhhhhhhhlllhhhhhhHHHHHHHHLHhhHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHhhhhhhllllllllhhhhhhhhHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLllllllllllLLLHHHHHhHHHHHHHHHHHHhhhLLLLlhhhhhhHHHHHHHhHHHHhHHHHHHHHHHLLLLLllllLLLLHHHHHHHHHHHHHHHHHHHHHhLLHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHLLLlLLLLLLLLLLHHHHHHHHHHHHHHHHHHLlLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLlLLHHHhHHHHHHHHHHHHHLLLHHhhhhhlllHHHHlLLHHHHHHHHLLLLLLLLLLLLLLLL qstarts=0,12,24,44,89,97,109,121,128,132,144,148,159,174,230,235,243,256,266,294,330,335,419,423 sstarts=84,96,107,148,195,204,219,230,238,243,254,262,272,288,343,349,356,368,379,405,431,437,463,468 lengths=10,11,19,37,8,12,4,7,4,11,4,10,15,55,5,7,12,10,26,25,5,18,4,10 u=0.675739,0.052742,0.735252,-0.694328,0.380517,0.610832,-0.247560,-0.923269,0.293750 t=-41,9,0 segments=274-283,286-296,297-315,338-374,410-417,419-430,434-437,445-451,453-456,458-468,469-472,477-486,487-501,503-557,558-562,564-570,571-582,583-592,594-619,620-644,646-650,652-669,678-681,683-692 compnd=_UNCHARACTERIZED_PROTEIN;>"   <A HREF=#alignment-1>1</A>:  5h11-A 13.4  4.7  329   494    9 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5h11&u=0.675739,0.052742,0.735252,-0.694328,0.380517,0.610832,-0.247560,-0.923269,0.293750&t=-41,9,0">PDB</A>  MOLECULE: UNCHARACTERIZED PROTEIN;                                   

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5h11A Z-score=13.4</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct gplgsqliqeftaaqrrgeigrmrevaavllhfkgyahcvdvyikqcqegaymrndvfed   60
DSSP  llllhhhhhhhhhhhhlllllhhhhhhhhhlllllhhhhhhhhhhhhhhlllllllhhhh


DSSP  ------------------------LHHHHHHHHHhhHHHHHHHHHHLlLLLHHHHHHHHH
Query ------------------------ALWSQYWTMLwaACAQSLDLRVGpWGDPKAVAQQLS   36
ident                          |          |             |       | 
Sbjct iailcqrvnkqvgevfcspetvmaKLIQSIFENKiqAHVKERLDETR-NSDVEQYLKNLY  119
DSSP  hhhhhhhhhhhhhhhlllhhhhhhHHHHHHHHLHhhHHHHHHHHHHH-LLLHHHHHHHHH


DSSP  HHHHHLL---------------------lLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Query QALCQAS---------------------lPQECEKELLSLCHSLFHRSLVCSWDQGFCQA   75
ident                                      |          |           
Sbjct DLYTRTTalaakltdynlgsdkhtflsklIKNIFSCYLESYIDMERQYLQNRSGMILQRY  179
DSSP  HHHHHHHhhhhhhllllllllhhhhhhhhHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHH


DSSP  HHHHHL--llllllllLHHHHHHH-HHHHHHHHHHLL---LLLLllllllllLHHHHHH-
Query LGSAVG--gqsspaspSTAELLQR-LFPPLLDILRQP---RPELslcqpagpTPVALGL-  128
ident   |                      |                                  
Sbjct YDSKNHqkridthgetLLSQEVVVnLLQETRHAFERCnklSDPA-dlpknafSIFLILVe  238
DSSP  HHLLLLllllllllllLLLHHHHHhHHHHHHHHHHHHhhhLLLL-lhhhhhhHHHHHHHh


DSSP  HHHH-HHHHHHHHHHHhHHHL----LLHHHHHHHHhLLHHHHHHHHHHHHH-HHHHLLLL
Query CTLQ-TTLLWFLGKAQqHLAA----WAPGPFLLLIqKDLPPLLHAVEALSS-LASEAAFS  182
ident                           |   ||           |               |
Sbjct YLCVdHIDYALEIGLS-AIPSadakNANLYFLDVV-QQANTIFHLFDKQFNdHLMPLISS  296
DSSP  HHHHhHHHHHHHHHHL-LLLLllllLLLLHHHHHH-HHHHHHHHHHHHHHHhLLHHHHLL


DSSP  LHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLhHHHLL-LLLLLL
Query LEVEQQLGLEIQKLTARMQLLPKESLSLFFQECHKQATQGFKLHMPRgGYWRL-RLCPEH  241
ident                  |                 |                        
Sbjct SPKLTECLHKKKEVIEQMEVKLDTGIDRTLNCMIGQMKYILTTEQKK-TDFKPeDENNVM  355
DSSP  LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLH-HHLLLlLLLLLL


DSSP  LlLLLHHHHHHHHHhHHHHHHHHLL-LLHHHHHHHHHHHHHHHHHHHHHHHHhlLLLLLH
Query PsDPSEYARVVVYTvLEPVLQGLRG-LPPEAQAPALSQALTATLGAWLDHILthGIRFSL  300
ident           |            |           |             |        | 
Sbjct I-QYTTACSKVCAY-VGKQVERVRRsMDGKNVDTVLTELGVRFHRLIHEHLQ--QFSYSS  411
DSSP  L-LLLHHHHHHHHH-HHHHHHHHHLlLLHHHHHHHHHHHHHHHHHHHHHHHH--HLLLLH


DSSP  HHHHHHHHHHHHHHHHHHLhhhlllhhhhhHHHLL-HHHHHHHHHHHHHHLLLLllllll
Query QGALQLKQDFGVVREVLEQeqwglspelrqTLLSL-SIFQQLDGALLCLLQQPLpknpvq  359
ident  |      |    |                        |  |      |   |       
Sbjct MGGMLAICDVAEYRRSAKD----------fRVPLVlQLFDTLHALCNLLVVAPD------  455
DSSP  HHHHHHHHHHHHHHHHHHL----------lLLHHHhHHHHHHHHHHHHHLLLHH------


DSSP  lllllllllllllllllllllllhhhhlllllllllllllhhhhhhhhllllllllllll
Query rrphrccfcnevqtielptsslnsleslapplrpgvspaqnthllstlggggrggggggp  419
ident                                                             
Sbjct ----------------------------------------------------nlkqvcsg  463
DSSP  ----------------------------------------------------hhhhhlll


DSSP  LLHH-HHHHHHHHHL----------------
Query SPEA-YLAGNQQAWL----------------  433
ident             |                  
Sbjct EQLTnLDRNLLHAFVqlrvdyrsarlgrhfs  494
DSSP  HHHHlLLHHHHHHHHllllllllllllllll


</PRE>
</PRE>
<HR>
<script>

function openViewer() {
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function poppush() {
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function mview() {
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function sans() {
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function sanspanz() {
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        document.optionform.target = "_blank";
        document.optionform.submit();
}

</script>


<H1>PF14923</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
<PRE>
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<PRE><IMG SRC=1.png>
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<PRE><IMG SRC=2.png>
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