Results: PF14646
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 6fvi-A 10.2 4.8 122 142 17 PDB MOLECULE: CENTROSOMAL PROTEIN OF 192 KDA;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=6fviA Z-score=10.2
back to top
DSSP llhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhlhhhhlhhhhhhhhhhhhhhhhhhhh Query ppqhnflknwrrhialrkkqqealskhlkkpasellmhtgesyrkiqeerevidralptq 60 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP lllllllhhhlllleelllllleelllllhhhllllllllllllhhhhhhhlllllllll Query hdgkatswfwspleylgdemtgllmtkkktqrglvepithirkplsiqvetglpaqkdaw 120 ident Sbjct ------------------------------------------------------------ 0 DSSP ------------------------------------------------------------ DSSP llllllllhhhhhhhhhhhhhhhhhlllllllhhhllllllllleeeeeelllllllllL Query yrytwdrslfliyrrkelqsimaeldfsqqdidglevvghgkpfssvtveehlppekiqK 180 ident Sbjct -----------------------------------------------------------P 1 DSSP -----------------------------------------------------------L DSSP LLLLHhHLLLllllllllllllLLLL-EEEELleeeellllllllhhhleeeeEEEEEE- Query SSSEDtVFLDsltnlsdmvpmpILGP-SLLFCgkpacwvrgsnpedkknigigVRLTFE- 238 ident | || Sbjct HXSVS-HLVK---------pxtKPPStKVEIR--------------------nKSITFPt 31 DSSP LLLLL-LLLL---------lllLLHHhLEEEE--------------------lLEEELLl DSSP EELLLEEEEEEEEELLLLLLEEEEEEEELL-----lllLLLLLLLLLLLEELLLLLEEEL Query TLEGERTSSELTVVNNGTVAIWYNWRRRPH-----qdfFQDLKQNKTQRFYFNNREGVIL 293 ident | || | | | || | | | Sbjct TEPGETSESCLELENHGTTDVKWHLSSLAPpyvkgvdeSGDVFRATYAAFRCSPISGLLE 91 DSSP LLLLLLEEEEEEEEELLLLLEEEEEEELLLleeellllLLLLEELLLLLEEEELLEEEEL DSSP LLLEEEEEEEEELLLLEEEEEEEEEEEE------LLLHhhleEEEEEEEEEELLLllhhh Query PGETKHFTFFFKSLNAGIFRESWEFGTH------PTLLggavLQVTLHAISLTQDifmde 347 ident | | | | | | | Sbjct SHGIQKVSITFLPRGRGDYAQFWDVECHplkephXKHT----LRFQLSGQSIEAE----- 142 DSSP LLLEEEEEEEELLLLLEEEEEEEEEEEEelllllLLEE----EEEEEEEEELLLL----- DSSP hhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllllllhhhhllhhhhhhhhlllllllhh Query rklletklaaheaitiaqsvlqdllrgistpertpspvdaylteedlfnyrnprlhyqhq 407 ident Sbjct ------------------------------------------------------------ 142 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhhhl Query vvqnlhqlwqqy 419 ident Sbjct ------------ 142 DSSP ------------
