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<TITLE>Dali: PF14616</TITLE><A name=s001A>
<h1>Results: PF14616</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="NFKKTSYEAQYILTKLDKSRKPDNTTRAGLCPYCETIEFFGLKNSSYGNHLAYKHGILTNGCSVPDPKYYGKYKFKKGEYDEPEKKKRRTNAHILEREGVLCTNCWQILEVNCTSRSSVLGHYLRHYRDSH"> 
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<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2lt7A sequence=ANKRMkVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYLSDRS dssp=LLLLLlLLLLLEEEEEELLEEEEEELLLLLEELLHHHHHHHHHHHHLLLLEELLLLLLEELLHHHHHHHHHHHHLLLLEEELLLLLEELLHHHHHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLHHHHLLL qstarts=1,61,69,95,119 sstarts=0,6,13,18,34 lengths=5,7,5,16,12 u=0.953120,-0.223802,0.203654,0.302031,0.662655,-0.685321,0.018423,0.714703,0.699185 t=-17,-3,-15 segments=472-476,478-484,485-489,490-505,506-517 compnd=_TRANSCRIPTIONAL_REGULATOR_KAISO;>"   <A HREF=#alignment-1>1</A>:  2lt7-A  3.0  3.8   45   133   18 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2lt7&u=0.953120,-0.223802,0.203654,0.302031,0.662655,-0.685321,0.018423,0.714703,0.699185&t=-17,-3,-15">PDB</A>  MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO;                           

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2lt7A Z-score=3.0</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lLLLLLllllleelllllllllllllleeelllllllleeellllhhhhhhhhhhlllll
Query nFKKTSyeaqyiltkldksrkpdnttraglcpycetieffglknssygnhlaykhgiltn   60
ident    |                                                        
Sbjct -ANKRM------------------------------------------------------    5
DSSP  -LLLLL------------------------------------------------------


DSSP  lLLLLLLEeEEEEEeellllllllllllllllleeEEEEEELLLLLLEEELllllllllL
Query gCSVPDPKyYGKYKfkkgeydepekkkrrtnahilEREGVLCTNCWQILEVnctsrssvL  120
ident      |                              |    |  |              |
Sbjct kVKHDDHY-ELIVD---------------------GRVYYICIVCKRSYVC--------L   35
DSSP  lLLLLLEE-EEEEL---------------------LEEEEEELLLLLEELL--------H


DSSP  HHHHHHHHHHL-------------------------------------------------
Query GHYLRHYRDSH-------------------------------------------------  131
ident     ||                                                      
Sbjct TSLRRHFNIHSwekkypcrycekvfplaeyrtkheihhtgerryqclacgksfinyqfms   95
DSSP  HHHHHHHHHHHlllleelllllleellhhhhhhhhhhhhlllleeellllleellhhhhh


DSSP  --------------------------------------
Query --------------------------------------  131
ident                                       
Sbjct shiksvhsqdpsgdsklyrlhpcrslqirqyaylsdrs  133
DSSP  hhhhhhllllllllllleeelllllllllllhhhhlll


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<H1>PF14616</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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