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<TITLE>Dali: PF14130</TITLE><A name=s001A>
<h1>Results: PF14130</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

<form NAME="optionform" METHOD="POST" TARGET="_blank"/>
<input TYPE="hidden" NAME="title" VALUE="PF14130">
<input TYPE="hidden" NAME="jobid" VALUE=PF14130>
<input TYPE="hidden" NAME="query_sequence" VALUE="NDSGGVAAKHGFLFQDCVAAYHVTRMLRDKTIRSVRCEVTDDIDIVSDGYIDFVQVKSTGKTRWNISDIVQNSKGADKKTIPCSSILHKSMQCESDLSLGRRYSIVTEEKVNKTLEYLTISPNARLDKPGRQELIDDLNKRTDNFLTDSGISVSDWIDAATWEVFSSLRELELLGIKNIRLASQDLHGVILSSETVAEDIWCRILDTVTRKG"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEEEELLLLLEEEEELLEEEEEEEELLLLLLLLHHHHHLLLLLLLLLLLLLLLHHHHHHLLLLLLLLEEEEEEEELLLLLHHHHHHHLLHHHLLLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHEEEEELLLHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="212    4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   209   210   211   212   213   214   215 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6vm6B sequence=gaIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEAlsDIEVCYFssekSLHVMYEAKNHSLTATEFWDEIRRFKSLFdtHPKNFIWFNLVCPSYNTAISPLISkiDRLRsvsVNGRseYLDWCvgKKIDfsLAEFALDYVGFITFNSENSESIFLSEIQDTINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFICHALEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPDRAQKTSSDWNSLIKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEIEHNGLIYRTDDHKQKEGQFFTKIEAVEPQGETEAIVAIGFPTAIGKDIDSTINEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHLFIKAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL dssp=llLLLLLLHHHHHHHHHHHHHHLLLLLEEEEELLLllEEEEEELllllLEEEEEEELLLLLLHHHHHHHHHHHHHHHhhLLLLEEEEEEEELLLLLLLHHHHHhhHHHLlhhHHHHhhHHHHHhhLLLLhhHHHHHHHHEEEEELLLLLHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHLLHHHLLEEHHHHHHHHHHHLHHHHHHHHLLLEELLLLLLLLLLLLLLLLLHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLHHHHHHHHHHLLHHHLLEEEEEELLEEEELLLLLLLLLLLLEEEEEELLLLLLEEEEEEELLLLLHHHHHHLLHHHHLLLEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLEEEEEEELLHHHHHHHHHLLLLLLEEEEEEEELLEEEEEEEELL qstarts=4,11,41,48,62,84,95,110,120,125,129,135,151,167,188,193 sstarts=2,7,37,48,59,67,79,93,105,112,118,125,131,146,163,167 lengths=5,28,7,11,8,10,14,10,4,4,5,4,15,17,4,19 u=0.194559,-0.956336,-0.218101,0.767173,0.009806,0.641365,-0.611222,-0.292105,0.735583 t=24,-54,-38 segments=15-19,20-47,50-56,61-71,72-79,80-89,92-105,106-115,118-121,135-138,141-145,148-151,154-168,169-185,186-189,190-208 compnd=_SAVED_DOMAIN-CONTAINING_PROTEIN;>"   <A HREF=#alignment-1>1</A>:  6vm6-B 11.9  3.4  165   440   10 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6vm6&u=0.194559,-0.956336,-0.218101,0.767173,0.009806,0.641365,-0.611222,-0.292105,0.735583&t=24,-54,-38">PDB</A>  MOLECULE: SAVED DOMAIN-CONTAINING PROTEIN;                           

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6vm6B Z-score=11.9</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  llllHHHHHhhHHHHHHHHHHHHHHHHHLLLEEEEEELLllLEEEEEL----LEEEEEEE
Query ndsgGVAAKhgFLFQDCVAAYHVTRMLRDKTIRSVRCEVtdDIDIVSD----GYIDFVQV   56
ident            |  ||          |          |   ||                 
Sbjct --gaIARVG--FGYQDAFVLRSLPLWLSQSAFSHIVSEAlsDIEVCYFssekSLHVMYEA   56
DSSP  --llLLLLL--LHHHHHHHHHHHHHHLLLLLEEEEELLLllEEEEEELllllLEEEEEEE


DSSP  ELLlllLLLHHHHHllllllllllllllLHHHHHHLLL-lLLLLEEEEEEEELLlLLHHH
Query KSTgktRWNISDIVqnskgadkktipcsSILHKSMQCE-sDLSLGRRYSIVTEEkVNKTL  115
ident |                                                 |     |   
Sbjct KNH---SLTATEFW--------------DEIRRFKSLFdtHPKNFIWFNLVCPS-YNTAI   98
DSSP  LLL---LLLHHHHH--------------HHHHHHHHHHhhLLLLEEEEEEEELL-LLLLL


DSSP  HHHHL--LHHH--lLLLL--LHHHH-hHHHHhhhlllllllllLHHHHHHHEEEEELLlH
Query EYLTI--SPNA--rLDKP--GRQEL-iDDLNkrtdnfltdsgiSVSDWIDAATWEVFSsL  168
ident   |                                              |      |   
Sbjct SPLISkiDRLRsvsVNGRseYLDWCvgKKID----------fsLAEFALDYVGFITFN-S  147
DSSP  HHHHHhhHHHLlhhHHHHhhHHHHHhhLLLL----------hhHHHHHHHHEEEEELL-L


DSSP  HHHHHHHHHHHHHHHHhhhlLLLLlHHHHHHHHHHHHHHHHHHL----------------
Query RELELLGIKNIRLASQdlhgVILSsETVAEDIWCRILDTVTRKG----------------  212
ident    |      |           |                  |                  
Sbjct ENSESIFLSEIQDTIN----IELL-RSQVKQLKDQFKNLISRSSfgpiyrkdfenficha  202
DSSP  LLHHHHHHHHHHHHHL----LLLL-HHHHHHHHHHHHHHHLLHHhlleehhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  212
ident                                                             
Sbjct leedrsqwlldpikinlsasssqyqdlnldisdfngpdraqktssdwnslikkavsigdf  262
DSSP  lhhhhhhhhllleelllllllllllllllllhhhhlllhhhllhhhhhhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  212
ident                                                             
Sbjct ihnsgdrrtllidgkqrmstacmlgyvfsatrnflleiehngliyrtddhkqkegqfftk  322
DSSP  hhhhlllleeeeellllhhhhhhhhhhllhhhlleeeeeelleeeellllllllllllee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  212
ident                                                             
Sbjct ieavepqgeteaivaigfptaigkdidstinevkslprlnlesshaidnmetlnlavrea  382
DSSP  eeeelllllleeeeeeelllllhhhhhhllhhhhllleeeeelllllllhhhhhhhhhhh


DSSP  ----------------------------------------------------------
Query ----------------------------------------------------------  212
ident                                                           
Sbjct ksalvsfksenklsklhlfikapsvfamvlghrlngicdiqlydwvdgqyiptaelnl  440
DSSP  hhhhhhhhhhlllleeeeeeellhhhhhhhhhlllllleeeeeeeelleeeeeeeell


</PRE>
</PRE>
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<H1>PF14130</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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