Results: PF14001
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 5oik-Z 7.7 1.3 50 488 18 PDB MOLECULE: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=5oikZ Z-score=7.7
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct dpnlwtvkckigeerataislmrkfiayqftdtplqiksvvapehvkgyiyveaykqthv 60 DSSP lleeeeeelllllhhhhhhhhhhhhhhhlllllllllleeeelllllleeeeeellhhhh DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct kqaiegvgnlrlgywnqqmvpikemtdvlkvvkevanlkpkswvrlkrgiykddiaqvdy 120 DSSP hhhhlllhhhhhhlllleellhhhllhhhlleellllllllleeeelllllllleeeeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct vepsqntislkmipridydrikappqrlfdaekirslggdvasdgdflifegnrysrkgf 180 DSSP ellllleeeeeellllllllllllllllllhhhhhhhllleeeelleeeellleeeelle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct lfksfamsavitegvkptlselekfrehnfqpgdnvevcegelinlqgkilsvdgnkiti 240 DSSP eeeeeellleelllllllhhhhhhlllllllllleeeelllllllleeeellllllllll DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct mpkhedlkdmlefpaqelrkyfkmgdhvkviagrfegdtglivrveenfvilfsdltmhe 300 DSSP leeellllllllllhhheellllllleeeelllllllleeeeeeelllleeeeellllle DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct lkvlprdlqlcsetasgvdvggqhewgelvqldpqtvgvivrleretfqvlnmygkvvtv 360 DSSP eeelhhheellllllllllllllllllleeellllleeeeeeellleeeeeelllleeee DSSP --------------LEELLLLLEELLLLEEEELL---LLLEEEEEEELLllllhhhhhhl Query --------------TTYDRNRNAITTGSRVMVSG---TGHTGKILSIDTegltaeqirrg 43 ident | | | | | | | | Sbjct rhqavtrkkdnrfaVALDSEQNNIHVKDIVKVIDgphSGREGEIRHLFR----------- 409 DSSP ehhhleelllllllEEELLLLLEEELLLEEEELLlllLLLEEEEEEEEL----------- DSSP lLEEELL-------lLLLLLHHHEEEL--------------------------------- Query kTVVVEG-------cEEKLAPLDLIRL--------------------------------- 63 ident | Sbjct sFAFLHCkklvenggMFVCKTRHLVLAneligqtvrisqgpykgyigvvkdatestarve 469 DSSP lEEEEELllllhhhhEEEEEHHHEEELlllllleeeelllllllleeeeeelllleeeee DSSP ------------------l Query ------------------g 64 ident Sbjct lhstcqtisvdrqrlttvg 488 DSSP ellllleeeeellleeell
