Results: PF13898
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7bu0-A 3.9 4.4 123 407 9 PDB MOLECULE: UNCHARACTERIZED PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7bu0A Z-score=3.9
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DSSP lllllllllhhhhhhhlllllllllllllllllLLLLLLLHHHHHHHHHHHHHHHHhLHH Query gmvfgnevskgilaqwsnqgirfssdpvtsmglVQHEGGPCGVLAAIQAFVLKYILfFSD 60 ident | | | Sbjct ---------------------------vnmfnvDNSGKGNCLYYAYSISLMYYLRA-KNN 32 DSSP ---------------------------llllllLLLLLLLHHHHHHHHHHHHHHHH-LLL DSSP HhhlllllllllllllllllllllllhhhllhhhhhHHHHHHHHHhhhhhllllleeeee Query ElkdvscmspeglgasfksqsipsynfssltegekvRALVRSMGEilfscgsnrraviat 120 ident Sbjct V-----------------------------------KITEDIFNK--------------- 42 DSSP H-----------------------------------HHHHHHHHH--------------- DSSP elllhhhhhhlllllhhhhhhhhllllllllhhhhhhheeeeeellhhhHHHHHHHLH-- Query lsisendiqrfegisevevvtkslqglsiesaldlqkvlrvetctsqttALQRLEANL-- 178 ident | | Sbjct -----------------------------------------------lgLKEEDRARLrk 55 DSSP -----------------------------------------------llLLHHHHHHHhh DSSP ---------------hhhhlLLHHHHHHHHHHHHHLHHH----hhHHLLLL--------- Query ---------------plfqsRMGALLFLISALLSRGLDL----vqSDRDDP--------- 210 ident | Sbjct llskdpdraftrdeiktiiePILGRATRDLAAEHTKVEFkssphdTPLFSSlhyavefgf 115 DSSP hhlllllllllhhhhhhlhhHHHHHHHHHHHHHHHHHHHhhlhhhLHHHHHhhhhhhhhh DSSP ------------------------LLLL-------------------------------- Query ------------------------SLPL-------------------------------- 214 ident Sbjct krslqineseltllidndfsnpdyTEAEiykvsglldalqeyiltrtpsvieefnrqwen 175 DSSP hhhhhhlllhhhhhlllllllhhhHLLHhhhlllhhhhhhhhhhhhhhhhhhhhhhhhhh DSSP -------------------------------------------------eelllLEELHH Query -------------------------------------------------vtapfGHASQE 225 ident | | Sbjct kkqelkeqsltekeiqvhqatildnilrketidfllaenekhldeyrehlrrefVWGSEE 235 DSSP hhhhlllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllLLLLHH DSSP HHHHHHHLllllllllleeeeelleeeelllllLLLEEEEHHHhllllLLLHhhhLLLLl Query IVNLLLCGeavpnvfdgrmdlgggmfvkgisryVEVGFLTLLEslnfcKVGQflkSPKWp 285 ident | Sbjct TLMVLHRA----iqgermvrnhegriepvydheIILHVHRNGA-----SPSY-qaGSPE- 284 DSSP HHHHHHHH----hhlleeeellllleeeellllLLEEEEELLL-----LLLL-llLLLL- DSSP EEEEEL-LLLEEEEELLL------------------------------------------ Query IWVVGS-ESHYTVLFALD------------------------------------------ 302 ident | | Sbjct MILNNEgNVHWTSIIPDAiftskltdkeeklldmlermqseygskelgvekyssisdwls 344 DSSP EEEEEElLLEEEEELLLLlllllllhhhhhhhhhhhhhhhhlllllllllllllhhhhhh DSSP -----------------------------------------------hhhhlllhhhhhh Query -----------------------------------------------psvqnenelegre 315 ident Sbjct dlmkqieliktsptavtkqkeielffqllakatpklasepalrmslgtlfsnflecipal 404 DSSP hhhhhhhhhhhlllhhhhhhhhhhhhhhhhhlhhhhlllhhhhhhhhhhhhhhhhlhhhh DSSP hhl Query tqi 318 ident Sbjct mve 407 DSSP lll
