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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7ls0-B 42.5 1.1 261 362 100 PDB MOLECULE: ALK TYROSINE KINASE RECEPTOR FUSED WITH ALK AND L
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7ls0B Z-score=42.5
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DSSP ---------------------------------------------LLLLLLEEEEEEEEL Query ---------------------------------------------WKVPATDTYSISGYG 15 ident ||||||||||||||| Sbjct vhwlfttcgasgphgptqaqcnnayqnsnlsvevgsegplkgiqiWKVPATDTYSISGYG 60 DSSP leeeellllllllllllhhhhhhhlllllllleellllllllleeEELLLLEEEEEEEEL DSSP LLLLLLLLLLLLLLLEEEEEEEEEELLLLLEEEELLLLLLLLLLLLLHHHHHHHHLLLLH Query AAGGKGGKNTMMRSHGVSVLGIFNLEKDDMLYILVGQQGEDACPSTNQLIQKVCIGENNV 75 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct AAGGKGGKNTMMRSHGVSVLGIFNLEKDDMLYILVGQQGEDACPSTNQLIQKVCIGENNV 120 DSSP LLLLLLLLLLLLLLLEEEEEEEEEELLLLEEEEELLLLLLLLLLLLLHHHHHHHHLLLLH DSSP HHHHHHHHLLHHHLLLLLLLLLLLEEEEEEELLEEEEEEEELLLLLLLLLLLLLLLLLLL Query IEEEIRVNRSVHEWAGGGGGGGGATYVFKMKDGVPVPLIIAAGGGGRAYGAKTDTFHPER 135 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct IEEEIRVNRSVHEWAGGGGGGGGATYVFKMKDGVPVPLIIAAGGGGRAYGAKTDTFHPER 180 DSSP HHHHHHHLLLLLLLLLLLLLLLLLEEEEEEELLEEEEEEEELLLLLLLLLLLLLLLLLLE DSSP EELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLHHHHHHHLLLLLLL Query LENNSSVLGLNGNSGAAGGGGGWNDNTSLLWAGKSLQEGATGGHSCPQAMKKWGWETRGG 195 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct LENNSSVLGLNGNSGAAGGGGGWNDNTSLLWAGKSLQEGATGGHSCPQAMKKWGWETRGG 240 DSSP EELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLHHHHHHLLLLLLLL DSSP LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLEEEEEEEEEEELLLLEEE Query FGGGGGGCSSGGGGGGYIGGNAASNNDPEMDGEDGVSFISPLGILYTPALKVMEGHGEVN 255 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct FGGGGGGCSSGGGGGGYIGGNAASNNDPEMDGEDGVSFISPLGILYTPALKVMEGHGEVN 300 DSSP LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLEEEEEEEEEEELLLLEEE DSSP EEELLL------------------------------------------------------ Query IKHYLN------------------------------------------------------ 261 ident |||||| Sbjct IKHYLNrmkdkflkhltgplyfspkcskhfhrlyhntrdctipayykrcarlltrlavsp 360 DSSP EEELLLlhhhhhhhhhllllllllllhhhhhhhhhllhhhllhhhhhhhhhhhhhhhhll DSSP -l Query -c 262 ident Sbjct vc 362 DSSP ll
