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<TITLE>Dali: PF12617</TITLE><A name=s001A>
<h1>Results: PF12617</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="jobid" VALUE=PF12617>
<input TYPE="hidden" NAME="query_sequence" VALUE="LIKRNDVDAMEIHTSGRQSTLFKELWSALGESVGYLKLIAVSLPNGGDSTISSMNKMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKERPPGFLQLAGGTNAHTIDGLKKEGLFQTTISEYLHDDTSTTSSSDSSHALISGIAYGGYARKIVGRILRSMQSQHGAAASIEEHPQHLLMALKEALALVGP"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LHHHLLLLEEEEELLLLLHHHHHHHHHHHHHHHHHLLEEEEEEELLLLHHHHHHHHHHHHHLLLLLLEEEEEEELLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLEEEEELLLLLLHHHHHHHLLLLLLLHHHHHLLLLLLLLLHHHHLLLLLEELLLHHHHHHHHHHHHHHHHHHLLLLLHHHLHHHHHHHHHHHHHHHLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="203  239   240   241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   433   434   435   436   437   438   439   440   441 
">
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4wy0G sequence=tdrvkrgmaemqkggvimdvvnaeqakiaeaagavavmalergvarmadptvieevmnavsipvmavrighyvearvLEALGVDYIDESEvltpaDEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGaSMLRTKGEPGTGNIVEAVRHMRKVNAQIrkvvnmsedelvaeakqlgapvevlreikrlgRLPVVNFAAGGVTTpADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL dssp=lhhhhhhhhhllllleeeeellhhhhhhhhhhllleeeellllllllllhhhhhhhhhhlllleellllllhhhhhhHHHHLLLLEEELLlllllLLLLLLLHHHLLLLEEEEELLHHHHHHHHHLLlLEEEEELLLLLLLLHHHHHHHHHHHHHHhhhhhllhhhhhhhhhhhlllhhhhhhhhhhlLLLLEEEEELLLLLhHHHHHHHHLLLLLEEELHHHHHLLLHHHHHHHHHHHHHLLLLHHHHHHHHHHL qstarts=0,5,17,24,32,37,49,68,85,102,116,151,162,191 sstarts=77,81,95,100,104,108,115,128,140,188,203,212,220,227 lengths=4,9,5,4,4,7,12,12,16,14,9,8,7,12 u=0.076616,-0.336980,-0.938389,-0.213348,-0.924898,0.314717,-0.973967,0.176091,-0.142756 t=-9,-13,-27 segments=93-96,97-105,111-115,116-119,120-123,124-130,131-142,144-155,156-171,204-217,219-227,228-235,236-242,243-254 compnd=_PYRIDOXAL_BIOSYNTHESIS_LYASE_PDXS;>"   <A HREF=#alignment-1>1</A>:  4wy0-G  6.8  2.9  123   256   15 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4wy0&u=0.076616,-0.336980,-0.938389,-0.213348,-0.924898,0.314717,-0.973967,0.176091,-0.142756&t=-9,-13,-27">PDB</A>  MOLECULE: PYRIDOXAL BIOSYNTHESIS LYASE PDXS;                         

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4wy0G Z-score=6.8</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct tdrvkrgmaemqkggvimdvvnaeqakiaeaagavavmalergvarmadptvieevmnav   60
DSSP  lhhhhhhhhhllllleeeeellhhhhhhhhhhllleeeellllllllllhhhhhhhhhhl


DSSP  -----------------LHHHlLLLEEEEEL--lllLHHHHhhHHHHhhhhHHHLlEEEE
Query -----------------LIKRnDVDAMEIHT--sgrQSTLFkeLWSAlgesVGYLkLIAV   41
ident                  |     ||                                   
Sbjct sipvmavrighyvearvLEAL-GVDYIDESEvltpaDEEFH--IDKR----QFTV-PFVC  112
DSSP  llleellllllhhhhhhHHHH-LLLLEEELLlllllLLLLL--LLHH----HLLL-LEEE


DSSP  EEEllllhHHHHHHHHHHHHlllllleEEEEEELLLLLLlllhhHHHHHHHHHHHHHLLL
Query SLPnggdsTISSMNKMFSIMkpnlqsfNLWQLDGRPMSGdigrgATKESIAFAVQLAKAK  101
ident                                  | |  |        |            
Sbjct GCR-----DLGEAARRIAEG------aSMLRTKGEPGTG-----NIVEAVRHMRKVNAQI  156
DSSP  EEL-----LHHHHHHHHHLL------lLEEEEELLLLLL-----LLHHHHHHHHHHHHHH


DSSP  -------------------------------lLLLLEEEEELLLLL-LHHHHHHHLllll
Query -------------------------------eRPPGFLQLAGGTNA-HTIDGLKKEglfq  129
ident                                 | |     |||                 
Sbjct rkvvnmsedelvaeakqlgapvevlreikrlgRLPVVNFAAGGVTTpADAALMMHL----  212
DSSP  hhhhhllhhhhhhhhhhhlllhhhhhhhhhhlLLLLEEEEELLLLLhHHHHHHHHL----


DSSP  llhhhhhlllllllllhhhhllLLLEELLLhhhHHHHHHHhhhhhhhhlllllhhhlhhh
Query ttiseylhddtsttsssdsshaLISGIAYGgyaRKIVGRIlrsmqsqhgaaasieehpqh  189
ident                          |   |     |                        
Sbjct ----------------------GADGVFVG---SGIFKSE--------------------  227
DSSP  ----------------------LLLLEEEL---HHHHHLL--------------------


DSSP  hhHHHHHHHHHHLL-----------------
Query llMALKEALALVGP-----------------  203
ident      | | | |                   
Sbjct --NPEKYARAIVEAtthyedyeliahlskgl  256
DSSP  --LHHHHHHHHHHHhhllllhhhhhhhhhhl


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<H1>PF12617</H1>
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