Results: PF12222
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 4r4x-A 18.4 3.0 246 544 17 PDB MOLECULE: PNGF-II;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=4r4xA Z-score=18.4
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DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct aqtyeityqnsfegkinqnhiisitnsdktllfnekiknkkadfpfevneinrknnevsq 60 DSSP lleeeeeeeeeelleelllleeeeellleeeeeehhhhllllllleeeeeeelllleeee DSSP ------------------------------------------------------------ Query ------------------------------------------------------------ 0 ident Sbjct faflnnneivktsdntilakqefkptsetgkilgynvkkavtsvnsntievwytndlkvk 120 DSSP eeelllleeeeeeellhhhhllleeeeeeeeelleeeeeeeeeelleeeeeeeellllll DSSP ----------------------------------------------------llllllll Query ----------------------------------------------------pirpprgs 8 ident Sbjct ggpsilgqdlglvlktvrngssvveatsvkkikalddqslfngknitekdaltykdxiwk 180 DSSP llllllllllleeeeeeellleeeeeeeeeeelllllhhhhllleeeellhhhhhhhhhh DSSP EEEEEEEEEE-EEELL------------lLLLLLEEEEELLLHhhhhhlLHHHEeEEEEE Query AGPCSTLLLS-ATFGA------------tYGRPPATAAYAPPAclgdagGAGALaLAVLE 55 ident | | | Sbjct SRFITIPVFEnETINFsdasksdqviqrfGNGTIILKKVKIPE------IKQGN-TIFVE 233 DSSP LLLEEEEEEEeEEELLlllllllllleeeHHHLEEEEEEELLL------LLLLL-EEEEE DSSP EEEEEELLLLLLEEEEEEL----------------------------------------- Query WAADCRGRQFDRIFGVWLS----------------------------------------- 74 ident | || | Sbjct LKQKSNGDAYDRTGDVFIIpqeraisyytgltqgvkslpvyqngngksyqgvaltpdylp 293 DSSP EEEEELLLLLLLEEEEEELlllllllhhhhhhhlhhhlleellllllleellllllllll DSSP LEEEEEEELLL--LLLL----------lEEEEEEEELHHHHHHHL-LLEEEEEEELLLLl Query GAELLRSCTAE--PRPN----------gILWSVSRDVTRYAALLA-EPGEVAVYLGNLId 121 ident || | | | | | | || Sbjct FIELXRFFTPFgiGHFNekiqlkgknwhNNTPYRQDITELRPQLSgKEILIGAFIGNYD- 352 DSSP LEEEEEEELLLllLLLLlllllllllllLLEEEEEELHHHHHHHLlLEEEEEEEELLLL- DSSP lllLLEEEEEEEEEEEELllllllllhhHLLLLLEEEEELLLLLLLL--llleEELLLLL Query ktyTGVYHANLTLHLYFRtdpqpqpppqQQQQADLIVPISRSLPLND--gqwfAIQNATD 179 ident | | | | | Sbjct ---KGGHQISLELSIHPD--------qqKIVNNNFVLPVFNTTNVXExagqdyPTXFNSD 401 DSSP ---LLLEEEEEEEEEELL--------llLLLLLLEEEEEEELLLLLHhhllllLLHHHLL DSSP -EEEEEEELLLLEEEEEEEEEEEELH----HHLLHhhlllhhhhhhlllllllllllLLE Query -VQSKKLAIPSNTYRAVLQVFVSFHS----DDEFWytnppndyirannlssvpgngaFRE 234 ident | | | ||| | Sbjct kGVEVDFILTKDLKNAQLRYITTGHGgwgaGDEFV----------------------PKE 439 DSSP lLEEEEEEELLLEEEEEEEEEEEEELllllLLLLL----------------------LLL DSSP EEEEELLEEEEEELLLLllllllllLLLLLLLL-------------------lllLLLLL Query VVARVDGEVVGAVWPFTviytggvnPLLWRPIT-------------------gigSFNLP 275 ident || | | | Sbjct NSIYLDGKLAHAFTPWR------tdCGSYRLFNpasgnfedglsssdlsrsnwcpGTITN 493 DSSP EEEEELLEEEEEELLLL------llHHHHHHHLlllllllllllhhhllllllllLLEEL DSSP EEEEELHHhhhhHLLLlEEEEEEEeELLL-------LLEEEEEEEEEEELLLlllleeee Query TYDIDITPflgkLLDGeEHDFGFGvTNAL-------DVWYVDANLHLWLDHKsekttggl 328 ident | | | | | | | | Sbjct PVYINLGN----LNAG-KHTIQVK-IPQGapegssqSFWNVSGVLLGQEHHH-------- 539 DSSP LEEEEEEE----ELLE-EEEEEEE-LLLLlllllllLEEEEEEEEEEELLLL-------- DSSP eeeeellleeeeeeeeelleeeeeeeeeeeeeeeeeeeelleeeeeeeeeeeeeeeeeee Query lsyeasglnlnvsseftgldgqfvtsasrhvsatgwvkssygevtttfnqrfcyeninvf 388 ident Sbjct ------------------------------------------------------------ 539 DSSP ------------------------------------------------------------ DSSP elllleeeeeeeeeeeeeeeeelllleeeeeeeeeeeel Query rkngtvqivnqtidaksgifakdasavllseefhevfpl 427 ident Sbjct ----------------------------------hhhhh 544 DSSP ----------------------------------lllll
