Results: PF12141
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3taw-A 20.8 3.2 277 349 11 PDB MOLECULE: HYPOTHETICAL GLYCOSIDE HYDROLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=3tawA Z-score=20.8
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DSSP lhhhhLLLL--llEELLL---EELLLLHHhhhHHHHhhllhhhHHHHHhlllhhhhhhll Query kcedlSSSY--sfDVSGP---QNKNCDLYkvlGKFLnddseyfQEISPlfpklkemlvkk 55 ident | | | || Sbjct -----SETAwcldGFERPtgvNPVIKPLP---TKFY-------CPXRE----------ds 35 DSSP -----LLLLllllLLLLLlllLLLLLLLL---LEEE-------ELLLL----------ee DSSP lhhhhEEEEEEEEEEEllLLEEEEEEEEEELLLLLLLLLlEEEEEEEEEELLLLLLllee Query eiekhWFQLIGSSVWLeqYGVHLMTSRIFYSSTGDKVKPvVSLTYVQVFDHEWREIenve 115 ident | | | | Sbjct vaweeSDTFNPAATIY--DGKIVVXYRAEDNSAQGIGSR-TSRLGYATSTDGIHFE---- 88 DSSP eelllLEEEEEEEEEE--LLEEEEEEEEELLLLLLLLLL-LEEELLEEELLLLLLE---- DSSP eeeellllleeeeeELEELLL----LLLLlllllllLLEELEEEEEEEEEllllLEEEEE Query livpdgegkykpmtYPTFLPM----SVYHnekqqqgRFYGVEDPRITLVRnklgYDEPII 171 ident | ||||| Sbjct -------------rDTKPAFYpakdNQAE-----neCPGGTEDPRIAXTE----DGTYVL 126 DSSP -------------eLLLLLLLllllLLHH-----hhLLLEEEEEEEEELL----LLLEEE DSSP EEEEEEeeeeeeeeeelleeeeeeeEEEEEEEEEEEEeeelllllllllllllllleEEE Query VYNSHHrkitdaksdndgesnihfkAYRSIFMAWLWQnqkgknnveeietgkmknrvYVK 231 ident | | Sbjct LYTQWN------------------rKVPRLAVATSKD------------------lkHWT 150 DSSP EEEEEL------------------lLLEEEEEEEELL------------------llLLE DSSP EE-EELL-LLLL--LLLLLLLLEEEL----------LHHHhhhhllllEEEEEEEllllE Query SK-ELIK-PNNK--REDKEKNWAPFI----------NYQQrlqqgfdsHVYFMYQfqdlK 277 ident | | Sbjct KFgPAFEkAYNGkfKDEATKSASLVTtlkgdkqviaKVNG--------KYFXYWGeknvY 202 DSSP EEeELLLlHHHHllLLLLLLLEEEEEeeelleeeelLLLL--------LEEEEELllllE DSSP EEEEELllllLLEEeEELL--LLLL----------llLEELLLLLEEHHhhllllllhhh Query ILKCSLldeeDCVWeYQFN--DKNG----------agRLRGGTELVNINqllttfdhpei 325 ident | | Sbjct AATSDN--liDWDP-LLDEngELLKlfsprsgyfdsqLTECGPPAILTK----------- 248 DSSP EEEELL--llLLEE-LLLLllLLLLllllllllllllEEEELLLEEEEL----------- DSSP hhhhhhlllleeEEEEEEEEEEEL-----LLLLLEEEEEEEEEEEEEllleEEEEEEL-L Query krvkdlmpqnreIWIGVARAALEK-----CGCGDKMYRPNIVILIKDgddqYRLSHVS-P 379 ident | | | Sbjct -----------dGIVLLYNGKNEPgekgdTAYPANSYCAGQALFDVN--npTKLIGRLdK 295 DSSP -----------lEEEEEEEEELLLhhhllLLLLLLLEEEEEEEELLL--llLLEEEELlL DSSP LLLLLLL--LLLLllllllllLEEEEEEEEEeEEEEeellllleeEEEEEEEEELLLLLE Query FVGLGIP--ILPWwpdkglcdGKNLIIPNGIsSWHLnkdednsvqDYLTLSISRADSTVD 437 ident | | ||| | Sbjct PFLQPTDdfEKSG------qyPAGTVFVEGL-VYYR---------NKWYLYYGCADSFVA 339 DSSP LLLLLLLhhHHLL------llLLLLEEEEEE-EEEL---------LEEEEEEEELLLEEE DSSP EEEEELHHHhhhllllllllllllllllllhhhhhhhhhhhhl Query LLHIKGLLKsilfddpnskllelndygfnnkniecavkssdaf 480 ident | Sbjct VAVSDKQLN---------------------------------f 349 DSSP EEEELLLLL---------------------------------l
