Content-type: text/html Dali: PF12062

Results: PF12062

Query: s001A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
1:  6nwz-A 18.5  4.1  390   665   15 PDB  MOLECULE: CARBOHYDRATE DEACETYLASE AGD3;

Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=s001A Sbjct=6nwzA Z-score=18.5

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DSSP  ---LLLEEEEEELLLllHHHHHHHHHHHHLLLEEEEEELLL-LLLLLLLEELLEELLLEE
Query ---TDPTVLVFVESQysSLGQDIIMILESSRFQYHIEIAPG-KGDLPVLIDKMKGKYILI   56
ident         ||       |        |      |     |     || |     | |  |
Sbjct hgsVLSNILVIAKDS--SAASSATSGLNAYGIPYTTLLVPQaGVGLPALNSSNVGNYGGI   58
DSSP  lleEELLEEEEELLH--HHHHHHHHHHHHHLLLEEEEELLLlLLLLLLLEELLEELLLEE


DSSP  EELLHHH---------hHLLLHHHHHHHHHHHHHHLLEEEEELLLlllllleeeLLLLLL
Query IYENILK---------yINMDSWNRSLLDKYCVEYGVGVIGFHKTseksvqsfqLKGFPF  107
ident                            |  |  ||||    |               |  
Sbjct VVAAEVSydyggttgyqSALTTDQWNQLYAYQLEYGVRMVQFDVY--------pGPKFGA  110
DSSP  EEEHHHEeelllllleeELLLHHHHHHHHHHHHHHLLEEEEELLL--------lLHHHLE


DSSP  EEE-EEEE----eEEEEELlLLLLL--LLLLLLLEEeeELLLLLEEEEELLLL-LEEEEE
Query SIY-GNLA----vKDCCINpHSPLI--RVTKSSKLEkgSLPGTDWTVFQINHS-AYQPVI  159
ident |   |                         |       |  |       |  |       
Sbjct SAVnGGCCntgveQLLSFT-DTSDFptAGLKTGATV--STEGLWHYPATISNSsNTKEIA  167
DSSP  EELlLLLLlllllLEEEEL-LLLLLhhHLLLLLLLE--ELLLLLLLLEEELLLlLEEEEE


DSSP  EEEEELLllllllllLLLEEEEEEEELLllLLLLEEEELLLLL---LHHHHHHHHHHHHH
Query FAKVKTPenlspsisKGAFYATIIHDLGlhDGIQRVLFGNNLN---FWLHKLIFIDAISF  216
ident                               ||     |                   |  
Sbjct QFAPNAV--------TSTASTAAVINNF--DGREQMAFFIGFAtdwSATSNYLQHAWITW  217
DSSP  EELLLLL--------LLLLEEEEEEEEE--LLEEEEEELLLLLlllLHHHHHHHHHHHHH


DSSP  HLLLLLLLLLLLLLLLEEEEELLLL-------lLLLLLHHHHHHHHHHHHHHHLLL---L
Query LSGKRLTLSLDRYILVDIDDIFVGK-------eGTRMNTNDVKALLDTQNLLRAQI---T  266
ident |                ||| |             |    |            |      
Sbjct LTRGLYAGHRRVNLNTQIDDMFLVTdiyypngsTFRITVEDMNGISAWVPTINAKMnpgS  277
DSSP  HLLLLLLLLLLLLLLEEEEEELLLEelllllllEELLLHHHHHHHHHHHHHHHLLLlllL


DSSP  LLLLEEEELHHHLLLL--------------------------------------------
Query NFTFNLGFSGKFYHTG--------------------------------------------  282
ident       |  |                                                  
Sbjct SYFVEVGHNGNGNIEQssstdagaaacngggieydsppdtplefkkplgtgtdlwpstpt  337
DSSP  LLLEEEEELHHHHHHHhlllhhhhhlllllllllllllllllllllllllllllllllll


DSSP  -------lhhhHHHHHHHHL--LHHHLEEEELLLLLLLHHHLlLHHHHHHHHHHHHHHHH
Query -------teeeDEGDDCLLG--SVDEFWWFPHMWSHMQPHLFhNESSLVEQMILNKKFAL  333
ident            |            | |    |   |                  |     
Sbjct tydwtvactqlDDLLRWWTTpaNRDAFGHISHTFTHEEQNNA-TYADVFKEISFNQAWLK  396
DSSP  lllllhhhhhlLHHHHHHHLhhHHLLLEEEELLLLLLLLLLL-LHHHHHHHHHHHHHHHH


DSSP  HLLLL----LLLLLLLLHHHLLLllLLHHHHHHHHHHhLLLEEEEL-----LLLLlllhH
Query EHGIP----TDMGYAVAPHHSGVypVHVQLYEAWKKVwNIKITSTE-----EYPHlkpaR  384
ident   |              |   |          ||     |                    
Sbjct QVGLDqakwFTSNGIIPPAITGL--HNGDALQAWWDN-GIRNCVGDntrpvLMNQ---qN  450
DSSP  HHLHHhlleEEEEEELLHHHLLL--LLHHHHHHHHHL-LLLEEELLlllhhHLLL---lL


DSSP  HLLLEEE-------LLEEEEELLLLLLLLLLLLHHHLL-----------LLHHHHHHHHl
Query YRRGFIH-------KNIMVLPRQTCGLFTHTIFYKEYP-----------GGPKELDKSIq  426
ident                   | ||                                |     
Sbjct AMWPYFTtvesdgfAGMQVNPRWATRIYYNCDTPACTVqewidtsagagSFDDLLAVEK-  509
DSSP  LLLLEELlhhhhllLLLEEELEELLLLLLLLLLHHHHHhhhhhhlllllLHHHHHHHHH-


DSSP  lLLLL-------------------------------------------------------
Query gGELF-------------------------------------------------------  431
ident                                                             
Sbjct -ADTMrhllglrhdgymfhqanlrnadvtpitvngvtakysifqawvetivqefvrlvdw  568
DSSP  -HHHHhhhhllllleeeeehhhhllllllleeelleeelllhhhhhhhhhhhhhhhhlll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  431
ident                                                             
Sbjct plvtithqemsenflaryqrdqcgyglsyavadkkitavtvtatgntcsrpipvtfpvap  628
DSSP  llllllhhhhhhhhhhhhhhllllleeeeeellleeeeeeeelhhhllllleeeeellll


DSSP  -------------------------------------
Query -------------------------------------  431
ident                                      
Sbjct tstqgyateqlgsdpltvwvqlsgspvtftlstpial  665
DSSP  lllllleeelllllleeeeelllllleeeeeeeeeel

PF12062

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