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<TITLE>Dali: PF12038</TITLE><A name=s001A>
<h1>Results: PF12038</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="SIVIIEAFYGGSHRQLVELLREELDDCVLYTLPAKKWHWRARTAALYFSQNIPSSEHYRTLFASSVLNLTELAALRPDLGKLKKILYFHENQLVYPVKKYQERDFQYGYNQILSCLVADVVVFNSSFNMESFLTSIGKFLKLIPDHRPKDLESIIRPKCQVIYFPI"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LEEEEEEEELHHHHHHHHHHHHHLLLEEEEEEELLLHHHHHHHHHHHHHHHLLLLLLLLEEEEELLLLHHHHHHHLHHHHLLEEEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLEEEELLHHHHHHHHLLHHHHHHHLLLLLLLLHHHHHHHHEEELLLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="166    2     3     4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6kihD sequence=rqPIALISVHGdpaadvghesAGGQNIYVRQLGEALAaagwHVDMFTRKtdpndpdviehsphcrtirlqagpltyIPREKLFETLPKFVEAFkaYHAKYgYPLIHTNyWLSGWvgWQLRQQFNFQWLHTYHSLGVVKYqVASEQaQRDETRLMVEKAILENADCVIVTSPQEEAYLRRWVSKAGQTRLIPCGTNLKLFYPVADARAQLNLPADEPIVLYVGRFDRRKGIETLVAAMAQIPQGQLLLVGGSDPQRSDGAERRRIEGLVQEYNLGDRVTFVGQIDHEYLAVYYSAANVCVVPSYYEPFGLVAIEAMACGTPVIASAVGGLQFTVIPEETGLLVPPQDANALANAIQRILADPAWARTLGKNGRERVQALFNWEAIALQMGQLYRQLFAAS dssp=llEEEEELLLLllllllllllLLHHHHHHHHHHHHHHhlllEEEEEEELllllllleeeeelleeeeeelllllllLLHHHLHHHHHHHHHHHhhHHHHHlLLEEEEElHHHHHhhHHHHLLLLLEEEEELLLLHHHHLlLLLLLlLLLHHHHHHHHHHHHHLLEEEELLHHHHHHHHHHLLLLLLEEELLLLLLLLLLLLLLLHHHHHLLLLLLLEEEEELLLLHHHLHHHHHHHHLLLLLLEEEEELLLLLLLLLLHHHLLHHHHHHHLLLLLLLEEEELLLLLLHHHHHHHLLEEEELLLLLLLLHHHHHHHLLLLLEEEELLLLHHHHLLLLLLEEEELLLLHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHLL qstarts=0,9,25,34,41,52,57,64,69,80,96,101,151,157 sstarts=2,21,41,76,82,95,101,109,116,123,140,146,181,185 lengths=9,16,8,6,11,5,7,5,7,16,5,35,4,9 u=0.576867,0.170800,-0.798781,-0.677079,0.647011,-0.350628,0.456933,0.743104,0.488885 t=-47,25,-120 segments=29-37,48-63,68-75,103-108,109-119,122-126,128-134,136-140,143-149,150-165,167-171,173-207,208-211,212-220 compnd=_TLL1590_PROTEIN;>"   <A HREF=#alignment-1>1</A>:  6kih-D 13.5  2.5  143   399   15 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6kih&u=0.576867,0.170800,-0.798781,-0.677079,0.647011,-0.350628,0.456933,0.743104,0.488885&t=-47,25,-120">PDB</A>  MOLECULE: TLL1590 PROTEIN;                                           

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6kihD Z-score=13.5</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  --LEEEEEEEE----------LHHHHHHHHHHHHHLL----LEEEEEEE-----------
Query --SIVIIEAFY----------GGSHRQLVELLREELD----DCVLYTLP-----------   33
ident    |  |               |     |  | | |          |             
Sbjct rqPIALISVHGdpaadvghesAGGQNIYVRQLGEALAaagwHVDMFTRKtdpndpdvieh   60
DSSP  llEEEEELLLLllllllllllLLHHHHHHHHHHHHHHhlllEEEEEEELllllllleeee


DSSP  ---------------lLLHHHHhHHHHHHHHHHL--LLLLL-LLEEEEE-LLLLH--HHH
Query ---------------aKKWHWRaRTAALYFSQNI--PSSEH-YRTLFAS-SVLNL--TEL   72
ident                              |            |                |
Sbjct sphcrtirlqagpltyIPREKL-FETLPKFVEAFkaYHAKYgYPLIHTNyWLSGWvgWQL  119
DSSP  elleeeeeelllllllLLHHHL-HHHHHHHHHHHhhHHHHHlLLEEEEElHHHHHhhHHH


DSSP  HHHLhhhhLLEEEEEELLLLLLLL-LLLLL-HHHHHHHHHHHHHHHHLLEEEELLHHHHH
Query AALRpdlgKLKKILYFHENQLVYP-VKKYQ-ERDFQYGYNQILSCLVADVVVFNSSFNME  130
ident                 |    |   |   |  ||             || |   |     
Sbjct RQQF----NFQWLHTYHSLGVVKYqVASEQaQRDETRLMVEKAILENADCVIVTSPQEEA  175
DSSP  HLLL----LLEEEEELLLLHHHHLlLLLLLlLLLHHHHHHHHHHHHHLLEEEELLHHHHH


DSSP  HHHLLHhhhhhhllllllllhHHHHhhHEEELLLLL------------------------
Query SFLTSIgkflklipdhrpkdlESIIrpKCQVIYFPI------------------------  166
ident                                |                            
Sbjct YLRRWV---------------SKAG--QTRLIPCGTnlklfypvadaraqlnlpadepiv  218
DSSP  HHHHHL---------------LLLL--LEEELLLLLllllllllllhhhhhlllllllee


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  166
ident                                                             
Sbjct lyvgrfdrrkgietlvaamaqipqgqlllvggsdpqrsdgaerrrieglvqeynlgdrvt  278
DSSP  eeellllhhhlhhhhhhhhlllllleeeeellllllllllhhhllhhhhhhhllllllle


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  166
ident                                                             
Sbjct fvgqidheylavyysaanvcvvpsyyepfglvaieamacgtpviasavgglqftvipeet  338
DSSP  eeellllllhhhhhhhlleeeellllllllhhhhhhhllllleeeellllhhhhllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------  166
ident                                                             
Sbjct gllvppqdanalanaiqriladpawartlgkngrervqalfnweaialqmgqlyrqlfaa  398
DSSP  eeeellllhhhhhhhhhhhhhlhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhhhhhhhl


DSSP  -
Query -  166
ident  
Sbjct s  399
DSSP  l


</PRE>
</PRE>
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<H1>PF12038</H1>
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