Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2zf4-F 4.4 5.2 98 183 15 PDB MOLECULE: HYPOTHETICAL PROTEIN VIOE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=2zf4F Z-score=4.4
back to top
DSSP ----------------------------------------LEEEEE-eEEELLE-EEEEe Query ----------------------------------------RIDTTL-lGFDNNT-WQRGn 18 ident ||| | Sbjct eppllparwssayvsywspmlpddqltsgycwfdyerdicRIDGLFnpWSERDTgYRLW- 59 DSSP llllllleeeeeeeeeeelllllllleeeeeeeelllleeEEEEELllLLHHHHlLEEE- DSSP EEEEEE------------ellleeeeeeeelllLEEEEeeeellllllllllllhhhhhh Query RSYIFK------------gaketatmieidhdtNEVMVeemssdigdivaippalgtvra 66 ident | Sbjct MSEVGNaasgrtwkqkvaygrertaeqlcerplDDETG---------------------- 97 DSSP EEEEEElllleeeeeeeeeeeelllleeeeeelLLEEE---------------------- DSSP hhllleeeeeeellLLEEEELeelllllleeLEEEELLEEEEEEEEeEEEEeeeeellll Query rlnapvitnniemdKISFERNkcgiwgwrseKSEMINGYNCKVYGAsNVEFvtktrmdhl 126 ident | Sbjct -pfaelflprdvlrRLGARHI----------GRRVVLGREADGWRY-QRPG--------- 136 DSSP -elllllllllhhhHLLLEEE----------EEEEELLEEEEEEEE-EELL--------- DSSP lhhhhhhhhllllllllllllllllllllllllhhhllllllllllllllllllllllll Query seeqiknktartplhsllgiadedyvspadaaaalkdrtpsprleeasnagvenggrnsp 186 ident Sbjct ------------------------------------------------------------ 136 DSSP ------------------------------------------------------------ DSSP llllllllllllllllllllllllhhhhllllllllllllllllleeeeeeEEEEEEEEE Query apgnqsngssagasgtstpkssvtpeeyftqefdlhgrdvggpknlstkvqRFRANLWLA 246 ident | | Sbjct ---------------------------------------------------KGPSTLYLD 145 DSSP ---------------------------------------------------LEEEEEEEE DSSP LLLlllhhhhlhhhhhhhhhhllhhhhhhhhhhhhllllLEEEEEEEEEeLLEEEEEELL Query EEHpirlqeqvlpildlmstmasphvsklrdfitmqlpaGFPVKVEIPLfHVLNACITFG 306 ident | | | Sbjct AAS------------------------------------GTPLRMVTGDeASRASLRDFP 169 DSSP LLL------------------------------------LLEEEEEELLlLLLEEEEELL DSSP LHHhllllllleeeeeelleeeEEELHHHHLLlllll Query NVFalttpvdhvatlqeqdrvtCLVDDRCFDIpahyt 343 ident || | | Sbjct NVS------------------eAEIPDAVFAA----- 183 DSSP LLL------------------lLLLLHHHHLL-----
