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<TITLE>Dali: PF11875</TITLE><A name=s001A>
<h1>Results: PF11875</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="PLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEKTKNGLIIQEAVYGKLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDSKLVLHGNNKKSDLLGFWDPRISEEKQLKVTYFFQNRLHRITVNDIDQLLIP"> 
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<input TYPE="hidden" NAME="cd1" VALUE=s001A>
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2zx0A sequence=aisitcegsdallqCDGAKIHIKRANYGRRQHDvcsigrpdnqltdtnCLSQsSTSKMAERCggKSECIVpaSNFVFGDPCVGTYKYLDTKYSCVQQQETISSIICEGSDSQLLCDRGEIRIQRANYGRRQHDVCSIGRPHQQLKNTNCLSQSTTSKMAERCDGKRQCIVKVSNSVFGDPCVGTYKYLDVAYTCD dssp=leeeeellleeeeeLLLLEEEEEEEEEELLLLLlllllllhhhlllllLLLLlHHHHHHHHHllLLEEEEelLHHHHLLLLLLLLLEEEEEEEEELLLLLEEEEEELLLEEEEELLLLLEEEEEEEEELLLLLLLLLLLLHHHLLLLLLLLLLHHHHHHHHHLLLLEEEEELLHHHHLLLLLLLLLEEEEEEEEL qstarts=47,78,82,92,103,109 sstarts=14,48,53,64,72,76 lengths=19,4,9,6,4,20 u=0.531144,0.779601,-0.331827,0.271779,-0.527705,-0.804775,-0.802510,0.337268,-0.492167 t=-49,49,65 segments=15-33,49-52,54-62,65-70,73-76,77-96 compnd=_CSL3;>"   <A HREF=#alignment-1>1</A>:  2zx0-A  3.9  3.4   62   195   19 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2zx0&u=0.531144,0.779601,-0.331827,0.271779,-0.527705,-0.804775,-0.802510,0.337268,-0.492167&t=-49,49,65">PDB</A>  MOLECULE: CSL3;                                                      

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2zx0A Z-score=3.9</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHLLLLEEEEEEE
Query plmkkkeqkkimekkekyadqarkakrkaemditlvkqlvenkvlkeKTKNGLIIQEAVY   60
ident                                                       |  | |
Sbjct ---------------------------------aisitcegsdallqCDGAKIHIKRANY   27
DSSP  ---------------------------------leeeeellleeeeeLLLLEEEEEEEEE


DSSP  ELLLLL---lllllhhhhhllLEEE-LHHHHHHLL-lLLLEEElllllHHHLllLLLLLL
Query GKLDEK---vdhsdpfsvefpPTID-VTIPLQYLV-eDSKLVLhgnnkKSDLlgFWDPRI  115
ident |                          |          |               | ||  
Sbjct GRRQHDvcsigrpdnqltdtnCLSQsSTSKMAERCggKSECIV---paSNFV--FGDPCV   82
DSSP  ELLLLLlllllllhhhlllllLLLLlHHHHHHHHHllLLEEEE---elLHHH--HLLLLL


DSSP  LLLLEEEEEEEELL----------------------------------------------
Query SEEKQLKVTYFFQN----------------------------------------------  129
ident    | |   |                                                  
Sbjct GTYKYLDTKYSCVQqqetissiicegsdsqllcdrgeiriqranygrrqhdvcsigrphq  142
DSSP  LLLLEEEEEEEEELlllleeeeeellleeeeellllleeeeeeeeellllllllllllhh


DSSP  -------------------------------------eeeeeeeelllleeel
Query -------------------------------------rlhritvndidqllip  145
ident                                                      
Sbjct qlkntnclsqsttskmaercdgkrqcivkvsnsvfgdpcvgtykyldvaytcd  195
DSSP  hllllllllllhhhhhhhhhlllleeeeellhhhhllllllllleeeeeeeel


</PRE>
</PRE>
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<H1>PF11875</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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