Results: PF11765
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7o9o-A 28.6 2.0 279 328 18 PDB MOLECULE: AWP3B;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7o9oA Z-score=28.6
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DSSP lllhhhlllleeeLLLEEEELLLLLlLLLEEELLLLEEEEELLLEEEELLLEEELLlLEE Query ialltqlifaieiAENKVDRGSITLnLGDIIIYTGATWSIIDNAYTNFVGKLDVRAdAGL 60 ident | | | | Sbjct ---------rgsdQTVRSVAGDQRV-TDPVIVGDNSILDYYGGSNYDFSNNFEIGR-GTL 49 DSSP ---------llllLEEEEEEEEEEE-LLLEEELLLEEEEEEEEEEEEELLLEEELL-LEE DSSP EEELL-----------llLLLLEEEELLLlLEEEELLEEEEEELL----lLLLLEEEEEE Query YITST-----------shLLALQVSLTTIlHSITNNGIISFDSRI----sRTSSSYDLRG 105 ident || ||| || Sbjct YIGKEsyfssfqsaptdvPNSFHLLIKNT-NNLQNNGQFIIENIKrhanqCSNSSIQVFP 108 DSSP EEELLlllllllllllllLLEEEEEEELL-LEEEELLEEEEELLLlllllLLEEEEEEEL DSSP EEEEELLEEEEEELLL----LLLEEEEEEEEEEELLEEEEEEL--------LLLLLEEEE Query ISFTNNGEMYFGSSGE----SSSSTSLTSASWSNTGLLSFFQN--------QRTSGTVNL 153 ident | | | || | | | | | Sbjct INFQNDGEFEIISGGVegrcCLPTSVIAPQNFLNNGKFYYKVLtdtgsiysGSCMQNVDI 168 DSSP LEEEELLEEEEEEELLllllLLLEEEELLLEEEELLEEEEEEEllllllllLLLLEEEEE DSSP LLLLLEEEELLEEEEEL-LEEELLLEEELLLEEEEELlLEEEELLllLLLLlLLEEEELL Query GVSMGSITNDGQICLNN-QVYEQTTQIKGSGCFTAKGdSTIYIANvvLAVSsKQNFYLTD 212 ident | | | | | | | | | Sbjct GASTTTTVNNNLWEFTGsINAQINGAVSGAAQINLDG-SNMFVNA--NTFS-GQVVNLIN 224 DSSP LLLLLEEEELLEEEEELlEEEEELLEEEELEEEEEEL-LEEEELL--LLLL-LEEEEEEL DSSP lLLEEEELLLlLLLEEEEELLLL----LLEEEELLLLLllllllLEEEELLLLEEEEEEL Query kGSSMIVQAVsTTQTFNVYGFGD----GNKIGLTLPLVgtifnsAFTYDTASGILTLRNT 268 ident | | | | | ||| ||| | Sbjct -GGSFLQTSDpLSNIVVINGLGTsdtgVTSIAVKGKGK------SFTYNPSSGIVKLTTV 277 DSSP -LLEEEELLLlLLLLEEEELLLEelleELEEEEELLEE------EEEELLLLLEEEEEEL DSSP -LEEEEEELLLLLLHHHEEEEEE---LLLLLLLEeeEEEEELLLLLLLlllhhhhlllll Query -LLEQKFNIGTGYEPSKFQVVTD---SGSGTPSTvlGSVAYYGHVPTRtlpkscqipckp 324 ident || || || | | | Sbjct eGKTYAYQIGCGYNTKKFITNNDsgaSYESADNF--FVLTYSEPYSPQ------------ 323 DSSP lLLEEEEELLLLLLHHHEEEEEEllhHHLLLLLE--EEEEELLLLLLL------------ DSSP llllllllllllllllllllllllllllllllllllllllllllllllllllllllllll Query ipkapnqsnesltnsvssyepatesaivspsdqvltssatsfvsasefsavttttvdsas 384 ident Sbjct ------------------------------------------------------------ 323 DSSP ------------------------------------------------------------ DSSP llllllllllllllllllllllllllllllllllllllllllllllllllllllllllll Query assstdineintsssiwnnennvsgavstsestsiannhdgslsmtkteseingfystes 444 ident Sbjct ------------------------------------------------------------ 323 DSSP ------------------------------------------------------------ DSSP lllllllllllllllllllllllllllllllll Query stmfvtatitscnksdcfenvvtyvsndsyttv 477 ident Sbjct ----------------------------tcqle 328 DSSP ----------------------------lllll
