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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7voj-A 36.6 2.5 373 400 40 PDB MOLECULE: ALUMINUM-ACTIVATED MALATE TRANSPORTER 1;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7vojA Z-score=36.6
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DSSP -----------LHHHHHLHHHHHHHHHHHHHHHHHHHHHHLHH-HHHH--HHHHHHHHHH Query -----------WRIGADDPRKVAHGFKMALALTLCSVFYYVKP-LYDF--TGQNAMWAVL 46 ident | | ||| | || ||| | | ||| | | |||||| Sbjct mekvreivregIRVGNEDPRRIIHAFKVGLALVLVSSFYYYQPfGPFTdyFGINAMWAVA 60 DSSP lhhhhhhhhhhHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHLLlLLLLllLLLLLHHHHH DSSP HHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHH Query TVVVVFEYTVGGCLYKGLNRAMATMTGAALALGVQWIASLSDKELEPFILSGSLFVFAAA 106 ident ||||||| || | ||||| || | | | || || | || || Sbjct TVVVVFEFSVGATLGKGLNRGVATLVAGGLGIGAHQLARLSGATVEPILLVMLVFVQAAL 120 DSSP HHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHH DSSP HHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHhLLLL-LHHHHHHHHHHHHHHHHHHHHHH Query ATYSRFLPTMKARFDYGVTIFILTYTLVAVGgYRVN-EVAFMARHRLTTIAIGAVICFAV 165 ident | || | | |||| ||||| | | | || | || | | Sbjct STFVRFFPWVKTKFDYGILIFILTFALISLS-GFRDeEIMDLAESRLSTVVIGGVSCILI 179 DSSP HHHHLLLHHHHHLLHHHHHHHHHHHHHHHLL-LLLLlHHHHHHHHHHHHHHHHHHHHHHH DSSP HHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhlllllllLLLL-lLLLLLHH Query CALVFPVWAGQELHNQVARNMDKLASAVESCVEDYFSeaagvdvvagAVPK-pALSDKSH 224 ident | |||||| || | | | | || Sbjct SIFVCPVWAGQDLHSLLASNFDTLSHFLQDFGDEYFE----------DYKVveKRKKNLE 229 DSSP HHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLL----------LHHHhhHHHHHHH DSSP HHHHHHHLHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHH Query GYKAVLNAKASEDSLANLATWEPAHGRFGFRHPYHLYQKVGAEMRSCAYCVDALSACVVS 284 ident || || | | ||| | ||| || | |||| | ||| | ||| ||| | Sbjct RYKSVLDSKSDEEALANYAEWEPPHGQFRFRHPWKQYVAVGALLRQCAYRIDALNSYINS 289 DSSP HHHHHHLLHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHL DSSP LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHH Query EAQTPAHVKKHLAGASAALGRHCSAMLREASGSVASMTRSGRLALVVGDMNAAALELRDE 344 ident | | || | | | | | | | || | Sbjct DFQIPVDIKKKLETPLRRMSSESGNSMKEMSISLKQMIKSSSSDIHVSNSQAACKSLSTL 349 DSSP LLLLLHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHH DSSP HH-HHHHHHhhllllllllllllllllllllLHHHHHHHHHHHHHHHHHHHHHHHHHHHH Query LR-FLAPLLeedestdteqeqnitmspapapSLIEALPLFTAASLLLEICTRAEGVVSAV 403 ident | | | | | | | | Sbjct LKsGILNDV----------------------EPLQMISLMTTVSMLIDIVNLTEKISESV 387 DSSP HLlLLLLLL----------------------LHHHHHHHHHHHHHHHHHHHHHHHHHHHH DSSP HHHL--------- Query DNLA--------- 407 ident || Sbjct HELAsaarfknkm 400 DSSP HHHHhhlllllll
