Results: PF11443
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1yvr-A 16.9 3.7 403 520 11 PDB MOLECULE: 60-KDA SS-A/RO RIBONUCLEOPROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=1yvrA Z-score=16.9
back to top
DSSP -------------LLLLLLLLLLLllHHHHHHHHLLLLL-----------LHHHHHHHHH Query -------------TENYSPTFASSgdPCLDFFFNVVPDT-----------HASTVTSLLS 36 ident | | Sbjct mdqtqplnekqvpNSEGCYVWQVS--DMNRLRRFLCFGSeggtyyieekkLGQENAEALL 58 DSSP llllllllllleeLLLLLEEEELL--HHHHHHHHHHHLLllllllllhhhHHHHHHHHHH DSSP HHHHH-LHHHHHHHHHHHHLLllLLLLLHHHHHHHHHHHHHH----LHHHHHHLHHHHHH Query AAWTA-EPNTALRLACNLRGVrgTGKSDHEGFYATALWMHDH----HPKTLALNAPSVAE 91 ident | | | Sbjct RLIEDgKGCEVVQEIKTFSQE--GRAAKQEPTLFALAVCSQCsdikTKQAAFRAVPEVCR 116 DSSP HHHHLlLHHHHHHHHHHHHHH--LLLLLLHHHHHHHHHHHLLllhhHHHHHHHHHHHHLL DSSP hlLLLHHHHHHHHHHLLlllllllllllllllllllllllllllhhhhhhhhhhhhhhhh Query fgYLKDLPELLHRIIHGgvstrtpppartrsyyssrrprkvrrdpatraariaasqekhr 151 ident | Sbjct --IPTHLFTFIQFKKDL------------------------------------------- 131 DSSP --LHHHHHHHHHHHHHL------------------------------------------- DSSP hhhhhhhhhhhhhhhhhhhhhhhhhhHLHHHHHHHHHHHHHhhHHHHhhhhhhhlllhhh Query kisdqaaverrkkraeaaaravemyaRDPKYRFLHDRTADLfaDLIAddmrkledgkvnn 211 ident | Sbjct --------------------------WGRALRKAVSDWYNT--KDAL------------- 150 DSSP --------------------------LLHHHHHHHHHHHHL--LLHH------------- DSSP llLHHHHL--lLLLLHHHhhhLHHH--hhhHHHLlllllllllllllhhhhhhhhHHHHH Query lsLASKWC--pSLYKCYDrstLLCE--sigRRLFpkgsdaelpedlpdeyyayrvRERLR 267 ident | Sbjct --NLAMAVtkyKQRNGWS-hkDLLRlshikPANE----------------gltmvAKYVS 191 DSSP --HHHHHHlllLLLLLLL-hhHHHHhllllLLLH----------------hhhhhHHHHH DSSP HH---------------------lhHHHH-----------------hHLLLHHHHhHLLL Query KM---------------------alVPLR-----------------rALHLPEVYiSARR 289 ident | | Sbjct KGwkevqeaykekelspetekvlkyLEATervkrtkdeleiihlideYRLVREHL-LTIH 250 DSSP LLhhhhhhhlllllllhhhhhhhhhHHHHhhhhllllhhhhhhhhhhHLLLHHHL-LLLH DSSP ---HHHL--LHHHLLHHHHHHHHHHHHHhhHHHHH---HHHHHHHlllLLLL------lL Query ---WGDV--VYSRVASVAMKNYTDLFLEhdHERFN---LFLANVKtgkAKIA------aG 335 ident | | Sbjct lksKEIWksLLQDMPLTALLRNLGKMTA--DSVLApasSEVSSVC---ERLTnekllkkA 305 DSSP hhlHHHHhhHHHLLLHHHHHHHHHHHHH--LLLLLlllHHHHHHH---HHHLlhhhhhhL DSSP LLLHHHHHLLL---LLLL---HHHHHHHHHHHHHHHHHHHLLLLL-LLEEEEELLLHHHL Query ALLPHDILASV---DSHD---KEGNEVANLQWKRMVDDLLELGKL-NNCLAVCDVSGSMN 388 ident | || | ||| ||| Sbjct RIHPFHILVALetyKKGHlrwIPDTSIVEALDNAFYKSFKLVEPTgKRFLLAIDVSASMN 365 DSSP LLLHHHHHHHHhhhHHLLlllLLLHHHHHHHHHHHHHLLLLLLLLlLLEEEEEELLHHHH DSSP LH-------HHHHHHHHHHHHHHHlLLLLllEEEELLLLLLEE--ELLLlLHHHHHHHHH Query GR-------PMDVCVALGLLLSELcDEPWhhRVITFSERPQLH--HIKGeTLYEKEEFIR 439 ident | | | | || | | | Sbjct QRvlgsilnASVVAAAMCMLVART-EKDS--HMVAFSDEMLPCpiTVNM-LLHEVVEKMS 421 DSSP LLlllllllHHHHHHHHHHHHHHH-LLLE--EEEEELLLEELLllLLLL-LHHHHHHHHL DSSP LLlLLLLLLHHHHHHHHHHHHhhllllhhhLLLEEEEEELLLLLLLLllllLLHHHHHHH Query EMeWGFNTDLQAVFDQLLHVAvsgnlpperMVKKVFVFSDMEFDQASsrawETDYEAITR 499 ident || || | | | Sbjct DI-TMGSTDCALPMLWAQKTN--------tAADIFIVFTDCETNVED----VHPATALKQ 468 DSSP LL-LLLLLLLLHHHHHHHHLL--------lLLLEEEEEELLLLLLLL----LLHHHHHHH DSSP HHHhllLHHHLLEEEEEELLLLLLLLLLLLLLLEEEEELLLHHHHHHHHLLLLLLllhhh Query KFNeagYGGAIPEVVFWNLRDSCSVPVTGNKKGVALVSGFSKNMLKLFLSGGYEKmtpra 559 ident | | || | Sbjct YRE---KMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNFTLDL----- 520 DSSP HHH---HHLLLLEEEEEELLLLLEELLLLLLLLEEEEELLLLLHHHHHHHHHLLL----- DSSP hhhhhllllllll Query vmeraisgreyek 572 ident Sbjct ------------- 520 DSSP -------------
