Content-type: text/html

<TITLE>Dali: PF11070</TITLE><A name=s001A>
<h1>Results: PF11070</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="title" VALUE="PF11070">
<input TYPE="hidden" NAME="jobid" VALUE=PF11070>
<input TYPE="hidden" NAME="query_sequence" VALUE="MRRLLYSFLFYMIIGLFSGFFYRELTKAYDFTGTTQLSLVHTHTLILGMFMFLILLPLEKLFKLSSYYLFNWFFYVYNIGVIVTIGMMVTKGFFQVTGKSYSPEAFAGFAGIGHTGMLAGLLLLFFLLRQA"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHLHHHHHHHHHHHHHHLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="131    1     2     3     4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131 
">
<input TYPE="hidden" NAME="cd2list" VALUE="dummy">
<input TYPE="button" NAME="D1" VALUE="Structural Alignment" ONCLICK="return mview();"/> 
<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
<input TYPE="button" NAME="D3" VALUE="3D Superimposition (PV)" ONCLICK="return openViewer();"/> 
<input TYPE="button" NAME="D4" VALUE="SANS" ONCLICK="return sans();"/>
<input TYPE="button" NAME="D5" VALUE="PANZ" ONCLICK="return sanspanz();"/>
<input TYPE="button" NAME="D3" VALUE="Pfam" ONCLICK="return poppush();"/>
<input TYPE="reset" VALUE="Reset Selection"/>
<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=6l3hB sequence=gqykklwyllfavlavcftilgymgsevykkappypeqvvsasgkvlmakddilagqsawqttggmevgsvlghgayqapdwtadwlhrelsawldltaqqtygkkfdevspeeqavlktrladeyrnqsrikedgsvvisdtrvkaiesilpyyhgvygddpalqttrehfamknntlpsqeareklfdfffwtswsastnrpdetftytnnwpheplinnvpttenymwsftsvvlllmgigllmwgysfltkheevevptedpiskvqltpsqkalgkyvfltvalfvvqvllggltahytvegqgfealgfemsdwfpyaltrtwhiqsaifwiatgfltaglflapivnggkdpkfqragvnflyialfivvggsyagnffalthilppefnfwfghqgyeyldlgrfwqlllmvglllwlflmlrctvsafkekgvdknllaifvasmvgvgvfyapglfygekspiavmeywrwwvvhlwvegffevfataafafvfynmgfvrrstatastlaaaaifmlggvpgtlhhlyfsgstsasmaigacfsalevvplvllgreayehwsyqhlsewakrlrwPLMCFVAVAFWNMIGaGVFGFLINPpiSLFYiqGLNTSAVHAHAALFGVYGFLALGFVLLVARylkpnvqFDDKLMTWGFWLLNGGLVGMIAiSLLPVGVIQAYASithglwyarseeflqmeILDTLRWVRTAADLIFIGGAICVAIQATKIV dssp=lllhhhhhhhhhhhhhhhhhhhhllllhhhhlllllleeeelllleellhhhhhhhhhhhhlllhhhlleelleellllllhhhhhhhhhhhhhhhhhlllllllllllllhhhhhhhhhhhhhhllllllllllleeeelhhhhhhhhhhhhhhhhhhllllllllllllllllllllllhhhhllhhhhhhhhhhhlllllllllllllllllllhhhlllllhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllllllllllllllllllllhhhhhhhhhhhlhhhhhhhhhhhhhllllllllllllllllhhhhllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllhhhhhhhlllllllllllhhhhhhhhhhhhhhhhhhhhllhhhhlllllllhhhhhhhhhhhhhhhllhhhllllllllhhhhhhhhhhlllllllllhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhlllhhhhhhlllllllllhhhhhhhhlllllhhhhllhhhhhhhhhhhhhllllllllhHHHHHHHHHHHHHHLlLLLLLLLLLhhHHHHhlLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLlllllllLLHHHHHHHHHHHHHHHHHHHHlLHHHHHHHHHHHHhhllhhhhllhhhhlllLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHL qstarts=0,15,25,33,64,86,101 sstarts=587,603,614,620,657,680,710 lengths=15,9,4,30,22,13,30 u=0.126882,-0.315999,0.940237,-0.984704,0.073986,0.157748,-0.119412,-0.945870,-0.301778 t=-85,73,124 segments=593-607,609-617,620-623,626-655,663-684,686-698,716-745 compnd=_NITRIC-OXIDE_REDUCTASE;>"   <A HREF=#alignment-1>1</A>:  6l3h-B 13.8  2.3  123   741   19 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=6l3h&u=0.126882,-0.315999,0.940237,-0.984704,0.073986,0.157748,-0.119412,-0.945870,-0.301778&t=-85,73,124">PDB</A>  MOLECULE: NITRIC-OXIDE REDUCTASE;                                    

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=6l3hB Z-score=13.8</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct gqykklwyllfavlavcftilgymgsevykkappypeqvvsasgkvlmakddilagqsaw   60
DSSP  lllhhhhhhhhhhhhhhhhhhhhllllhhhhlllllleeeelllleellhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct qttggmevgsvlghgayqapdwtadwlhrelsawldltaqqtygkkfdevspeeqavlkt  120
DSSP  hlllhhhlleelleellllllhhhhhhhhhhhhhhhhhlllllllllllllhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct rladeyrnqsrikedgsvvisdtrvkaiesilpyyhgvygddpalqttrehfamknntlp  180
DSSP  hhhhhllllllllllleeeelhhhhhhhhhhhhhhhhhhlllllllllllllllllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct sqeareklfdfffwtswsastnrpdetftytnnwpheplinnvpttenymwsftsvvlll  240
DSSP  lhhhhllhhhhhhhhhhhlllllllllllllllllllhhhlllllhhhhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct mgigllmwgysfltkheevevptedpiskvqltpsqkalgkyvfltvalfvvqvllgglt  300
DSSP  hhhhhhhhhhhhlllllllllllllllllllllllhhhhhhhhhhhlhhhhhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct ahytvegqgfealgfemsdwfpyaltrtwhiqsaifwiatgfltaglflapivnggkdpk  360
DSSP  llllllllllllllllhhhhllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct fqragvnflyialfivvggsyagnffalthilppefnfwfghqgyeyldlgrfwqlllmv  420
DSSP  lhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllhhhhhhhlllllllllllhhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct glllwlflmlrctvsafkekgvdknllaifvasmvgvgvfyapglfygekspiavmeywr  480
DSSP  hhhhhhhhhhhllhhhhlllllllhhhhhhhhhhhhhhhllhhhllllllllhhhhhhhh


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct wwvvhlwvegffevfataafafvfynmgfvrrstatastlaaaaifmlggvpgtlhhlyf  540
DSSP  hhlllllllllhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhlllhhhhhhlll


DSSP  -----------------------------------------------LHHHHHHHHHHHH
Query -----------------------------------------------MRRLLYSFLFYMI   13
ident                                                         |   
Sbjct sgstsasmaigacfsalevvplvllgreayehwsyqhlsewakrlrwPLMCFVAVAFWNM  600
DSSP  llllllhhhhhhhhlllllhhhhllhhhhhhhhhhhhhllllllllhHHHHHHHHHHHHH


DSSP  HH-HHHHHHHHH-hHHHLllllLLLHHHHHHHHHHHLHHHHHHHHHHHHHHL------hH
Query IG-LFSGFFYRE-lTKAYdftgTTQLSLVHTHTLILGMFMFLILLPLEKLFK------lS   65
ident ||    ||         |        | || |    |   || |                
Sbjct IGaGVFGFLINPpiSLFY--iqGLNTSAVHAHAALFGVYGFLALGFVLLVARylkpnvqF  658
DSSP  HLlLLLLLLLLLhhHHHH--hlLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLlllllllL


DSSP  HLHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHLLL---------------llLHHHHHHH
Query SYYLFNWFFYVYNIGVIVTIG-MMVTKGFFQVTGK---------------sySPEAFAGF  109
ident    |  | |   | |    |       |  |                             
Sbjct DDKLMTWGFWLLNGGLVGMIAiSLLPVGVIQAYASithglwyarseeflqmeILDTLRWV  718
DSSP  LHHHHHHHHHHHHHHHHHHHHlLHHHHHHHHHHHHhhllhhhhllhhhhlllLLLLLLLL


DSSP  HHHHHHHHHHHHHHHHHHHHHL-
Query AGIGHTGMLAGLLLLFFLLRQA-  131
ident           |            
Sbjct RTAADLIFIGGAICVAIQATKIv  741
DSSP  HHHHHHHHHHHHHHHHHHHHHHl


</PRE>
</PRE>
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<H1>PF11070</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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