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<TITLE>Dali: PF11001</TITLE><A name=s001A>
<h1>Results: PF11001</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="SSDNWDAITRQLHDLFNSLNQGVCKEIAKLWIRILAPNKQKHFPYSKKDVVPNWWPRDVVHTEPDHLRKEDRIKVLINVVTNKNFKFRDVDTKSIKTKVEHTEAIIHEIIYIAYL"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLHHHLLHHHLLLLLLLHHHHHHHHHHHHHL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="115   80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=4zdsB sequence=STPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNgkedwwpqlglpkdqgPAPYKKPHDLKKAWKVGVLTAVIKHMFpDIAKIrkLVRQskcLQDKmTAKESATWLAIINQEESLARE dssp=LHHHHHLLLLHHHHHHHHHHHHHHLLLLHHHLLHHHLLLLLLLLLlllllhhhhlllllllLLLLLLHHHLLHHHHHHHHHHHHHHHLlLHHHHhhHHHLlhhHHHHlLHHHHHHHHHHHHHHHHHLLL qstarts=10,41,49,57,85,90,94,98 sstarts=0,30,37,61,89,96,103,108 lengths=30,7,8,27,5,4,4,17 u=-0.025841,-0.934903,0.353961,0.904711,-0.172491,-0.389545,0.425242,0.310166,0.850274 t=8,-20,-46 segments=173-202,203-209,210-217,234-260,262-266,269-272,276-279,281-297 compnd=_PROTEIN_ETHYLENE_INSENSITIVE_3;>"   <A HREF=#alignment-1>1</A>:  4zds-B 12.0  2.1  102   129   20 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=4zds&u=-0.025841,-0.934903,0.353961,0.904711,-0.172491,-0.389545,0.425242,0.310166,0.850274&t=8,-20,-46">PDB</A>  MOLECULE: PROTEIN ETHYLENE INSENSITIVE 3;                            

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=4zdsB Z-score=12.0</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  llllhhhhhhHHHHHHHHLLHHHHHHHHHHHHHHHLLLHHhHLLLLLLlLLLLLLLL---
Query ssdnwdaitrQLHDLFNSLNQGVCKEIAKLWIRILAPNKQkHFPYSKKdVVPNWWPR---   57
ident                   |                 |     ||  |  | | |||    
Sbjct ----------STPHTLQELQDTTLGSLLSALMQHCDPPQR-RFPLEKG-VPPPWWPNgke   48
DSSP  ----------LHHHHHLLLLHHHHHHHHHHHHHHLLLLHH-HLLHHHL-LLLLLLLLlll


DSSP  -------------LLLLLLLLLLLHHHHHHHHHHHHHLLLlLHHHL--LHHH---LLLL-
Query -------------DVVHTEPDHLRKEDRIKVLINVVTNKNfKFRDV--DTKS---IKTK-   98
ident                    |  | |     ||  |                       | 
Sbjct dwwpqlglpkdqgPAPYKKPHDLKKAWKVGVLTAVIKHMFpDIAKIrkLVRQskcLQDKm  108
DSSP  llhhhhlllllllLLLLLLHHHLLHHHHHHHHHHHHHHHLlLHHHHhhHHHLlhhHHHHl


DSSP  LLLHHHHHHHHHHHHHL----
Query VEHTEAIIHEIIYIAYL----  115
ident      |    ||         
Sbjct TAKESATWLAIINQEESlare  129
DSSP  LHHHHHHHHHHHHHHHHhlll


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<H1>PF11001</H1>
<TITLE>Dali logos </TITLE>
<H1>Dali logos </H1>
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