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<TITLE>Dali: PF10936</TITLE><A name=s001A>
<h1>Results: PF10936</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="query_sequence" VALUE="LHQLAIAPVDVSGALLGLVLNAPAPRPLATHRLAHTDGSALQLGVLGASHVVTVEGRFCEEVSCVARSRGGDLPESTHAPGYHLQSHTETHDEAAFRRLARHLRERCTRATGWLGGVFPGDDAALTALAAEPDGTGWRWRTWHLYPSASGGTVVHTTSRW"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LEELLLLLLLLLHHHLEEEELLLLLLLLEEEEEELLLLLEEEEEELLLLEEEEELLLEEEEEEHHHHHHHLLLLLEEEELLEEEEEEEEEEEHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLEEEEEEEEELLEEEEEEEEEEEELLEEEEEEEEEEL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="160    3     4     5     6     7     8     9    10    11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=1jl0A sequence=hfFEGTEKLLEVwfsrqqgsgdlrtiprsewdillkdvqCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCgtTLLLKalvpllklardysgfdsiqsffYSRKnfmkpshqgyphrnfqeeieflnaifpngagycmgrmnsdcwylytldfpvisQPDQTLEILMSeLDPAVMDQFymkdgvtakDVTResgirdlipGSVIDATMFNPCGYSMNGMKSDGTYWTIAITPEPEfSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQ dssp=llLLLLLEEEEEeeelllllllhhhllhhhhhhhhhlllLLEEEEEELLLEEEEEELLLEEEEELLEEEEEELllLLHHHhhhhhhhhhhhhhllleeeeeeEEEEllllhhhlllllllhhhhhhhhhllllleeeeeellllllleeeeeellllllLLLEEEEEEEElLLHHHHHHHlllllllhhHHHHhllllllllLLEEEEEELLLLLEEEEEELLLLLEEEEEEELLLLlLEEEEEELLLLLLLHHHHHHHHHHHLLLEEEEEEEEELLLLLLLLLLEEEEEEEEEELLLEEEEEEEEEELL qstarts=10,15,24,39,56,64,70,79,90,101,109,123,136,150 sstarts=2,6,39,49,65,75,102,159,171,189,202,214,224,238 lengths=4,6,10,16,8,5,4,11,9,4,12,10,13,9 u=-0.582537,-0.771694,0.255224,-0.769457,0.422403,-0.479074,0.261892,-0.475462,-0.839850 t=30,-1,-38 segments=7-10,11-16,49-58,59-74,75-82,85-89,112-115,172-182,184-192,202-205,215-226,227-236,237-249,251-259 compnd=_S-ADENOSYLMETHIONINE_DECARBOXYLASE_PROENZYME;>"   <A HREF=#alignment-1>1</A>:  1jl0-A  8.1  2.8  121   310   12 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=1jl0&u=-0.582537,-0.771694,0.255224,-0.769457,0.422403,-0.479074,0.261892,-0.475462,-0.839850&t=30,-1,-38">PDB</A>  MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME;              

</form>
</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=1jl0A Z-score=8.1</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  leelllllllLLHHhLEEEEL------------------------lllLLLLEEEEEEll
Query lhqlaiapvdVSGAlLGLVLN------------------------apaPRPLATHRLAht   36
ident             |    |                                          
Sbjct --------hfFEGT-EKLLEVwfsrqqgsgdlrtiprsewdillkdvqCSIISVTKTD--   49
DSSP  --------llLLLL-LEEEEEeeelllllllhhhllhhhhhhhhhlllLLEEEEEELL--


DSSP  lllEEEEEELLLLEEEEELlLEEEEEEH--HHHHH---------------------hLLL
Query dgsALQLGVLGASHVVTVEgRFCEEVSC--VARSR---------------------gGDL   73
ident         ||  |       |      |                                
Sbjct ---KQEAYVLSESSMFVSK-RRFILKTCgtTLLLKalvpllklardysgfdsiqsffYSR  105
DSSP  ---LEEEEEELLLEEEEEL-LEEEEEELllLLHHHhhhhhhhhhhhhhllleeeeeeEEE


DSSP  L------------------------------------------------leeeeLLEEEE
Query P------------------------------------------------esthaPGYHLQ   85
ident                                                             
Sbjct KnfmkpshqgyphrnfqeeieflnaifpngagycmgrmnsdcwylytldfpvisQPDQTL  165
DSSP  EllllhhhlllllllhhhhhhhhhllllleeeeeellllllleeeeeellllllLLLEEE


DSSP  EEEEE-EEHHHHHHH-------hhHHHH-----hhhhLLLEEEEELLLLllLEEEEEEEE
Query SHTET-HDEAAFRRL-------arHLRE-----rctrATGWLGGVFPGDdaALTALAAEP  132
ident        | |                                   |              
Sbjct EILMSeLDPAVMDQFymkdgvtakDVTResgirdlipGSVIDATMFNPC--GYSMNGMKS  223
DSSP  EEEEElLLHHHHHHHlllllllhhHHHHhllllllllLLEEEEEELLLL--LEEEEEELL


DSSP  ElleEEEEEEEEEEELLeEEEEEEEEE---------------------------------
Query DgtgWRWRTWHLYPSASgGTVVHTTSR---------------------------------  159
ident |       |    |      |   |                                   
Sbjct D---GTYWTIAITPEPEfSYVSFETNLsqtsyddlirkvvevfkpgkfvttlfvnqsskc  280
DSSP  L---LLEEEEEEELLLLlLEEEEEELLlllllhhhhhhhhhhhllleeeeeeeeelllll


DSSP  -----------------------------l
Query -----------------------------w  160
ident                               
Sbjct qkiegfkrldcqsamfndynfvftsfakkq  310
DSSP  llllleeeeeeeeeellleeeeeeeeeell


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</PRE>
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<H1>PF10936</H1>
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<H1>Dali logos </H1>
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