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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 7w72-S 44.4 2.7 511 533 92 PDB MOLECULE: PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS C
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=7w72S Z-score=44.4
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DSSP ---------------LHHHHHHHLHHHHHHHHHLLLLLLLLHHHHHHHLLLEEEEEEEEE Query ---------------FFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVT 45 ident ||||||||||||||||||||||||||||||||||||||||||||| Sbjct aathlevargkraalFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVT 60 DSSP lhhhhhhhhhhhhhhHHHHHHHHLHHHHHHHHHLLLLLLLLLLHHHHLLLLEEEEEEEEE DSSP EEELLLLLL--HHHHllLLEEEEEEEEELLLLLLEEEEEEEEEEEELLHHHHHHHLLlLH Query VVFTRESVP--LDDQekLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSgSV 103 ident ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct VVFTRESVPldDQAK--LPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSS-GS 117 DSSP EEELLLLLLllLLLL--LLLLEEEELLLLLLLLLEEEEEEEELLEELLHHHHHHLLL-LH DSSP HHHHHHLlLLLLL--LLLLEEEEEELLLLLLLLLLLLEEELLLLEEEEELLLLLLHHHHH Query QEAEAMLdEPQEQ--AEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNII 161 ident | ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct VQEAEAM-LDEPQeqAEGSLTVYVISEHSSLLPQDMASYIGPKRTAVVRGIMHREAFNII 176 DSSP HHHHHHL-LLLLLllLLLLEEEEEELLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLHHH DSSP HHHHHHHHHHHLLLHHHHHHHLLLLLLLLLLLLLlLLLLLLLLEEEEEEEEEELLLLLEE Query GRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEkRRPLKSSLGYEITFSLLNPDPKSHD 221 ident |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct GRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEkRRPLKSSLGYEITFSLLNPDPKSHD 236 DSSP HHHHHHHHHHHLLLLLHHHHHHLLLLLLLLLLLLlLLLLLLLLEEEEEEEEEELLLLLEE DSSP EELLHHHHHHHHHHHHHHHLLLLLEEEEEEEEEELLLLLLLLEEELLLLEEEELHHHHHH Query VYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSLPH 281 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct VYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSLPH 296 DSSP EELLLHHHHHHHHHHHHHHHHHHLEELLEEEEEELLLLLLLLEEELLLLEEEELHHHHHH DSSP HHHHHHHHHLHHHLLLLLEEEEEEELLLHHHLLEEELLLLLLLLLLLEEEELLLEEEEEL Query VINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVY 341 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct VINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVY 356 DSSP LLHHHHHHLLLLLLLLLLEEEEEEELLLHHHLLEEELLLLLLLLLLLEEELLLLLEEEEL DSSP LLLhHHHH-lLLLLEEEELLHHHHHHHHHHHHHHHHLLLLLLLLLLEEELLLLLLLLLHH Query NVDsKTYN-aSVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMTW 400 ident ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct NVD-SKTYnaSVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMTW 415 DSSP LLL-LLLLllLLLLEEEELLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHH DSSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH Query ELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELAS 460 ident |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct ELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELAS 475 DSSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHLL DSSP LLHHHHHHHHHHHHHHHHHHHLLHHHHHLLLLLHHHHHHHHHhHHHHHHHHHHHHHHHHh Query GHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIpLFLPMAVPILLSLVKIf 520 ident |||||||||||||||||||||| |||||||||||||||||| | Sbjct AHLASAFVASQEAVTSSELAFFDASLLHLLYFPDDQKFAIYI-PLFLPMAVPILLSLVK- 533 DSSP LLHHHHHHHHHHHHHHHHHHHLLHHHLLLLLLLHHHHLLLLH-HHHHHHHHHHHHHHHL- DSSP hhhhhl Query letrks 526 ident Sbjct ------ 533 DSSP ------
