Results: PF10343
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1xqo-A 12.8 3.1 185 253 9 PDB MOLECULE: 8-OXOGUANINE DNA GLYCOSYLASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=1xqoA Z-score=12.8
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DSSP --------------------------------LLLL----lLLHHHHHHHHHHHHLLLLL Query --------------------------------LAPS----pDSDDAINWVFVTDTMNFSF 24 ident Sbjct aaesqlkrvietlrrlgieevlklerrdpqyrAVCNvvkrhGETVGSRLAMLNALISYRL 60 DSSP lhhhhhhhhhhhhllllhhhhhhhhlllhhhhHHHHhhhhhLHHHHHHHHHHHHHLLLLL DSSP LlllllllleeeelleeeELHHHHHHHHHHHHHLLLLLlLHHHHLlllhhhHHHHLllll Query WpekedeqcevvcrgdtyRGYMSLCAAITRAMDEGVPItNPSFFSeiseseLAKVLrsds 84 ident | | Sbjct T-----------------GKGEEHWEYFGKYFSQLEVIdLCRDFL----kyIETSP---- 95 DSSP L-----------------LLHHHHHHHHHHHHHLLLLLlHHHHHH----hhHHHLL---- DSSP lllLLLHHHHHHHHHHHHhhhhhllLLHHhhHHLLlllHHHHHHHHHHHlhHHLLeeeel Query ptpMPMLRERHQALTEAGrvlvqhgGSFRtfMSRCendAQKMVQHIVENipSYRDeatye 144 ident | | Sbjct -flKIGVEARKKRALKAC-------DYVP--NLED---LGLTLRQLSHI--VGAR----- 135 DSSP -llLLLHHHHHHHHHHHL-------LLLL--LLLL---HHHHHHHHHHH--HLLL----- DSSP leeeeLLHHHHHHHHHHHHHHHH-LLLLLLllHHHLLLLLLLHHHHHHHHLLLLLLlhhh Query gkrisFYKRAQILVADFWGIMEA-RGEGNIpnLDYLTMFADYRVPQGLVYLGALRYsdal 203 ident | || |||| | Sbjct ----rEQKTLVFTIKILNYAYMCsRGVNRV-lPFDIPIPVDYRVARLTWCAGLIDF---- 186 DSSP ----lLLHHHHHHHHHHHHHHHHhHLLLLL-lLLLLLLLLLHHHHHHHHHLLLLLL---- DSSP hhhhhlllllllllhHHHHHHHHHHHHHHHHHHHHHhhhhhhhlllllLLHHHHHHHHHH Query metlkngellssgerREVEIRGCSIWCVEKIRQHLWklveekdgkschINSALIDFYLWP 263 ident | | || Sbjct ------------ppeEALRRYEAVQKIWDAVARETG------------IPPLHLDTLLWL 222 DSSP ------------lhhHHHHLHHHHHHHHHHHHHHHL------------LLHHHHHHHHHH DSSP HHHHLLL-------------------HHHHlllllllllll Query YAKKHHK-------------------EMAHipihhtrciyy 285 ident Sbjct AGRAVLYgenlhgvpkevialfqwrgGCRP----------p 253 DSSP HHHHHLLllllllllhhhhhhlllllLLLL----------l
