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<TITLE>Dali: PF10238</TITLE><A name=s001A>
<h1>Results: PF10238</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=5hj0C sequence=qpSVFQCKKCFQIVGDSnawvISHREYLSFTLSDAVenSVRVEDTFKRSDDglCVYSELSCTRCNEVIGKVYNstpiylddiRDMYTFSmdKLQAYQLGN dssp=llEEEEELLLLLEEEELlleeEEELLLLEEEELLLLllLEEELLLLEELLLllLEEEEEEELLLLLEEEEEEEellhhhhhhLLLEEEEhhHEEEEELLL qstarts=33,49,56,65,104,124,131 sstarts=2,21,27,38,53,82,91 lengths=15,6,9,13,20,7,5 u=0.974073,-0.215844,-0.067778,-0.080992,-0.052964,-0.995307,0.211241,0.974990,-0.069072 t=-47,23,-29 segments=21-35,40-45,46-54,57-69,72-91,101-107,110-114 compnd=_KINETOCHORE_PROTEIN_MIS18;>"   <A HREF=#alignment-1>1</A>:  5hj0-C  9.2  1.7   75   100   15 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=5hj0&u=0.974073,-0.215844,-0.067778,-0.080992,-0.052964,-0.995307,0.211241,0.974990,-0.069072&t=-47,23,-29">PDB</A>  MOLECULE: KINETOCHORE PROTEIN MIS18;                                 

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=5hj0C Z-score=9.2</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  lllllhhhhhhhhhhhhhhhhhlllllllllllLLEELLLLLLEEELL---lEELLLLlL
Query lyddqedednekwvkehrkiargsdapgsseadGVLSCPGCMVELTRD---cQRHEIYkT   57
ident                                   |  |  |             |  |  
Sbjct -------------------------------qpSVFQCKKCFQIVGDSnawvISHREY-L   28
DSSP  -------------------------------llEEEEELLLLLEEEELlleeEEELLL-L


DSSP  LEEELLLL--LEEEEEEEEELLLllhhhhhhhhhhhhhlllllllllhhHEEEEEEELLL
Query QYRAMFVT--NCQLDGEKMAIEKtgkdrrrdrqkakksgkmadgpvlpdEMYTQVKCSSC  115
ident                                                    |    |  |
Sbjct SFTLSDAVenSVRVEDTFKRSDD------------------------glCVYSELSCTRC   64
DSSP  EEEELLLLllLEEELLLLEELLL------------------------llLEEEEEEELLL


DSSP  LLEEEEELL---------LLLEEEL--LLEEL----
Query GTIVAMMDS---------DEIYHFF--NVLAG----  136
ident                      | |      |     
Sbjct NEVIGKVYNstpiylddiRDMYTFSmdKLQAYqlgn  100
DSSP  LLEEEEEEEellhhhhhhLLLEEEEhhHEEEEelll


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<H1>PF10238</H1>
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