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<TITLE>Dali: PF10170</TITLE><A name=s001A>
<h1>Results: PF10170</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=2cjsC sequence=aPTCGICHkTKFADgcGHNCSYCQTKFCARCGGRVslrsnkVMWVCNLCRKQQE dssp=lLLLLLLLlLEELLllLEELLLLLLEELLLLEEEEeellleEEEEEHHHHHHHL qstarts=0,7,48,64,69 sstarts=1,9,16,30,41 lengths=7,5,14,5,13 u=0.242807,-0.757757,-0.605680,-0.059383,-0.634804,0.770388,-0.968255,-0.151089,-0.199132 t=21,-17,-8 segments=90-96,98-102,105-118,119-123,130-142 compnd=_UNC-13_HOMOLOG_A;>"   <A HREF=#alignment-1>1</A>:  2cjs-C  4.4  1.5   44    54   23 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=2cjs&u=0.242807,-0.757757,-0.605680,-0.059383,-0.634804,0.770388,-0.968255,-0.151089,-0.199132&t=21,-17,-8">PDB</A>  MOLECULE: UNC-13 HOMOLOG A;                                          

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<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=2cjsC Z-score=4.4</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  -LLLLLLL-LLLLLleeelllllllllllllleeeeellllllllleeeeEEELLLLLLE
Query -FECELCT-LTAPYsyvgqkppntqsmvlleesyvmkdpftsdkdrflvlGSCCSLCSRL   58
ident    |  |                                           |  || |   
Sbjct aPTCGICHkTKFAD----------------------------------gcGHNCSYCQTK   26
DSSP  lLLLLLLLlLEELL----------------------------------llLEELLLLLLE


DSSP  EELLllLEEEL------LLEEEHHHHHHLHhhllhhhhhhhl
Query VCVGpeCSLFY------SKRFCLPCVRENInafpqeirqdle   94
ident  |    |              |  |                 
Sbjct FCAR--CGGRVslrsnkVMWVCNLCRKQQE------------   54
DSSP  ELLL--LEEEEeellleEEEEEHHHHHHHL------------


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<H1>PF10170</H1>
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<H1>Dali logos </H1>
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