Results: PF10113
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3t7v-A 19.8 3.1 274 339 16 PDB MOLECULE: METHYLORNITHINE SYNTHASE PYLB;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=3t7vA Z-score=19.8
back to top
DSSP lhhhhhhhlllhHHHHHHHHHHHhhhhlllllhhHHHHHHHHHHLL----LHHHHHHHHH Query mrelikeavnslDSALELRKLIIkklnekklkesDIIEIVDAVDDL----SLEEIQKLGS 56 ident | || Sbjct ------------SLGDKVIEGYQ-----------LTDNDLRTLLSLeskeGLERLYSAAR 37 DSSP ------------LHHHHHHLLLL-----------LLHHHHHHHHLLllhhHHHHHHHHHH DSSP HHHLllLLLL-EEEEEEELLLL---------------------LLLHHHHHHHHHHHHHH Query NLRTfpMGCD-LVEIAVGPCSS---------------------SLTLIQFIENCILTDYM 94 ident | | | || | | Sbjct KVRD--HYFGnRVFLNCFIYFStycknqcsfcyyncrneinryRLTMEEIKETCKTLKGA 95 DSSP HHHH--HHHLlEEEEEEEEEEElllllllllllllllllllllLLLHHHHHHHHHHHLLL DSSP LL-LEEEEHHhhHHHHhhhllLHHHHHHHHHHHLLLLEEEELEELLeellllhhhhllll Query GF-PIHICSYavADIAekeglKPIEVLKMVLENVDVPIDIDHFGMYgpmrfpkeithcyg 153 ident || | | | || | | Sbjct GFhMVDLTMG-eDPYYyedpnRFVELVQIVKEELGLPIMISPGLMD-------------- 140 DSSP LLlEEEEEEL-lLHHHhhllhHHHHHHHHHHHHHLLLEEEELLLLL-------------- DSSP hhhhhlllllllllllhhhllhhhhhllHHHHHHHHH-HLLEEEEELLLLL--LLLLLL- Query dcyfkgppfkgcprnrihkrliekekehADEFEDWIK-LASTLCINVVEEQ--GGEEHA- 209 ident | | Sbjct ----------------------------NATLLKAREkGANFLALYQETYDteLYRKLRv 172 DSSP ----------------------------HHHHHHHHHlLEEEEELLLLLLLhhHHHHHLl DSSP -LLHHHHHHHHHHHHHLLLEEEEEEELL--LLLHHHHHHHHHHHHLLLLEEEEELLL--- Query -APLEEMKIVAETAKKYGKGLEGIFHIG--DGYDDLITGIKACIDLDVDVFVVEGAP--- 263 ident || | | | | | | | Sbjct gQSFDGRVNARRFAKQQGYCVEDGILTGvgNDIESTILSLRGMSTNDPDMVRVMTFLpqe 232 DSSP lLLHHHHHHHHHHHHHHLLEEEEEEEELllLLHHHHHHHHHHHHHLLLLEEEEEELLlll DSSP ------llLLLLhhhHHHHHHHHHHHHLLLLEEEEE-ELLH-HHHHHHHHLLLLEEE-EE Query ------fnRAKNrlkAFAKAIAVSRILVKGGVVATN-GAYE-DECRVGLRSGLNTIL-TG 314 ident | | | | | | | | | Sbjct gtplegfrDKSN--lSELKIISVLRLMFPKRLIPASlDLEGiDGMVLRLNAGANIVTsIL 290 DSSP llllllllLLLL--lLHHHHHHHHHHHLLLLLLEEEhHHHHhHHHHHHHHLLLLEEEeEL DSSP LL---LLLHhhhllLLLLLlllLLLHHHHHHHHHHHHHhlllllLEELlhhHHHHhhhhh Query FP---LNHHgymcgYSPKTakrGNFGLRRVMRIIKEEIragnvnATFIdkdMVKAialgn 371 ident | | | | | Sbjct PPdsqLEGV---anYDRDL-eeRDRDIKSVVRRLEIMG------MKPA---RQAD----- 332 DSSP LLlllLLLL---llLLLLL-llLLLLHHHHHHHHHHHL------LEEL---LHHH----- DSSP hhlllllllleelleelllhHHHHhhhlhhhhhllllllhhhlllleeeeelllhhhhhh Query rflkgniypysiggfylgdaHWAAikesnlckklkinktiddisaekvgliggryiswai 431 ident Sbjct -------------------fEAVL------------------------------------ 337 DSSP -------------------hHLLL------------------------------------ DSSP hlllleeeeelllhhhhhhhhhhhhhllleeeellllllhhhhlleeeellllhhhhhhh Query aekaeevyisdtdswvekatikilneaginaypcngddkkvleadkayittfipnialki 491 ident Sbjct ------------------------------------------------------------ 337 DSSP ------------------------------------------------------------ DSSP hhhhllllll Query lnklrdskve 501 ident Sbjct --------xx 339 DSSP --------ll
