Results: PF10070
Query: s001A
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2fgy-A 13.5 3.8 279 471 13 PDB MOLECULE: CARBOXYSOME SHELL POLYPEPTIDE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=2fgyA Z-score=13.5
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DSSP lllhhhhllllllhhhlllllllhhhllllhhhhhhhhhhhhlllllllhHHHHHHHH-- Query ienakrvitplspisifaarnpwegleadtfedvakwlrdvrdvdifpnkALIESAVA-- 58 ident Sbjct ----------hpacitlpertcrhpltdleaneqlgrcedsvknrfdrviPFLQVVAGip 50 DSSP ----------llllllllllllllllllhhhhhhhhhhhhhhhhhhhlhhHHHHHHHHll DSSP -------------lllllhHHHHHHHHhhhhhllllllhhhhhhhhhhhlllllllhhhh Query -------------rgeldeSVFNQLVTdmllehhynipqhyinlyidniktlkdvpasym 105 ident | Sbjct lgldhvtrvqelaqsslghTLPEELLK--------------------------------- 77 DSSP lllllhhhhhhhhhhhhllLLLHHHLL--------------------------------- DSSP llhhhhhhhhhhhhhhhhhllllllllllllhhhllllllllllhhhhhhhhhhhhhhhh Query nhsnvdvvadlllekskrdmaesyhhydvrpmsdaiideqgeplseqvnrqmikwtklyi 165 ident Sbjct ------------------------------------------------------------ 77 DSSP ------------------------------------------------------------ DSSP lllllllllllllllhhhhhhhhhlllllllhhhhhhhhlllllhhhhhhhhhhhlllll Query dqflsswtmpkreqsfyhawlhlaqhdhsftkaqrqvikglpndpemtiesvlthfsidq 225 ident Sbjct ------------------------------------------------------------ 77 DSSP ------------------------------------------------------------ DSSP llhhhhhhhhhlllhhhhhhhhhhhhhlhhhllhhhhhhhhhhhhhhhhhllllllhhhh Query edyqayveghllalpgwagmlyyrsqqhhfeqhlltdylairlvveqllvgdefksvakd 285 ident Sbjct ------------------------------------------------------------ 77 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhhhhhhhhhhhllllhhhhllllhhhhhhhhhhhhhlLHHHHhhHHHHHHHH Query cesrsenwfkqtvaswcyysdmpsdvllqhdvneiqtfihfaatmNKNVFknLWLIAWEM 345 ident Sbjct -------------------------------------------dnWISGH--NLKGIFGY 92 DSSP -------------------------------------------llLLLLL--LHHHHHHH DSSP HHHHHHHHHHHHHHHhhhhhhhllllllllllllllllllllllllllllllllllllLL Query TYESQLKQKIKAGHEsvagaldvnqvnvsendnanqphsvllndtqavdennselnqmGT 405 ident | Sbjct ATAKALTAATEQFSR-------------------------------------ddsasaIG 115 DSSP HHHHHHHHHHHHLLL-------------------------------------lhhhhhHH DSSP LL------LEEEEEELLLLHHHHHHH-HHHH--llEEEEEELLLLLlleeeellllllle Query ST------KAQIAFCIDVRSEPFRRH-IEAA--gpFETIGIAGFFGlpiqkdavdeqfkh 456 ident | | | | || Sbjct FFldcgfhAVDISPCADGRLKGLLPYiLRLPltafTYRKAYAGSMF-------------- 161 DSSP HHhhhleeEEEEEELLLHHHLLHHHHhHLLLllllEEELLLHHHLL-------------- DSSP ellllllllleeeeeellhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhhhhh Query dslpvmvppayrikefadrydmnvyrqqqqtmssmfytfklmknnvmpslllpelsgpfl 516 ident Sbjct ------------------------------------------------------------ 161 DSSP ------------------------------------------------------------ DSSP hhhhhhhhhlhhhhhhhhhhhhhhhlllllleelllllllllllllllllhhhhhhhhhh Query slstivnsimprksraslqkikqkwlkkpetkltidrefdrtsdlpvgfteqeqidfalq 576 ident Sbjct ------------------------------------------------------------ 161 DSSP ------------------------------------------------------------ DSSP HHHHllLLLLL--------------------lLEEEEEEEELLLllllLHHHHLLHHHLL Query ALKLmdLTEAF--------------------aPFVVLAGHASHShnnpHHASLECGACGG 616 ident | | | | | | Sbjct DIED--DLAQWeknelrryregvpntadqptrYLKIAVYHFSTS----DPTHSGCAAHGS 215 DSSP LHHH--HHHHHhhhhhhhhhhlllllllllleEEEEEEEEELLL----LLLLLLLHHHLL DSSP LL--LHHHHHHHHHHHLLhhHHHHHHHllllllllLEEEEEEEELLLLEEEEeELLLL-- Query AS--SGFNAKLLAMICNRpnVRQGLKQsgvyipetTVFAVAEHHTSTDTLAWvYVPDT-- 672 ident | | | || || Sbjct NDraALEAALTQLMKFRE--AVENAHC----cgasIDILLIGVDTDTDAIRV-HIPDSkg 268 DSSP LHhhHHHHHHHHHHHHHH--HHHHHLL----llllEEEEEEEEELLLLEEEE-ELLLLll DSSP ------------------------------------------------LLHHHHHHHHHH Query ------------------------------------------------LSSIALDAYESL 684 ident | | Sbjct flnpyryvdntvtyaqtlhlapdearviiheailnanrsdgwakgngvASEGMRRFIGQL 328 DSSP lllllleeehhhhhhhhllllhhhhhhhhhhhhhhhhlllhhhlllllLLHHHHHHHHHH DSSP HHHHHHHHHHHHhhhhllllllllllLHHHHHHhhhhlllllLLLLLLLlLLEEEEELHh Query NDAMPMISEHANrerldklptigrvnHPVEEAQrfasdwsevRPEWGLAkNASFIIGRRq 744 ident | | | Sbjct LINNLSQIDYVV--------------NRHGGRY--------pPNDIGHA-ERYISVGDG- 364 DSSP HHHHHHHHHHHH--------------HHHLLLL--------lHHHLLLL-LLEEEEELL- DSSP hHLLLLLLLLEEEEELLhhhllllhHHHHHhHLHHHHHHHHHHHHHHHHHlhhhhllllh Query lTKGIDLEGRTFLHNYDwrkdkdgtLLNTIiSGPALVAQWINLQYYASTVaphfygsgnk 804 ident | | | | Sbjct -FDEVQIRNLAYYAHLD--------TVEEN-AIDVDVGITIFTKLNLSRG---------- 404 DSSP -LLLLLLLLLEEEEELL--------LLHHH-HHHHHHHHHHHHHHLHHHL---------- DSSP hheeeellleeeelllllllllllhhhheeelleellllLLLEEEELL------------ Query atqtvtsgvgvmqgnasdlmyglswqsvmaadrtmyhspIRLLVVIQA------------ 852 ident | Sbjct ---------------------------------------LPIPIAIHYrydpnvpgsrer 425 DSSP ---------------------------------------LLEEEEEEEeellllllhhhh DSSP LHHHHHHHHHH-LHHHHHHHHLLLL--------------------- Query PDYVVARLLAN-NEHFARKVSNHWL--------------------- 876 ident | | | | Sbjct TVVKARRIYNAiKERFSSLDEQNLLqfrlsvqaqdigspieevasa 471 DSSP HHHHHHHHHHHhHHHLHHHHHLLLEeeeeeeeelllllleeeelll
