Results: PF09909
Query: s001A
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The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3k8i-A 7.9 4.3 182 247 9 PDB MOLECULE: 30KLP;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=s001A Sbjct=3k8iA Z-score=7.9
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DSSP lhhhhhhhhhhhhhhhhhhhhhlllllllllllllllllllLLLLLEEEEELLllLHHHh Query glvgfgaiallsagvwalqyagsgpektlsplvvhnnlqidLNEPDLFLDSDSlsQLPKd 60 ident | | Sbjct ---------------------------sgawkasvdplgvvGSGADVYLYFPVagNENL- 32 DSSP ---------------------------lllhhhlllhhhhhLLLLLEEEEEELllLHHH- DSSP hlllhhhhhhhhhhhhhHHHLLhhhHHHHhhhhhhhhhlllllllLHHHHHHL--LLEEE Query lltipflhdvlsedfvfYYQNHadrLGIEgsirrivyehdltlkdKLFSSLLD--QPAQA 118 ident | Sbjct ---------------isRIIEN---HESK----------------ADIKKIVDrtTAVYG 58 DSSP ---------------hhHHHLL---LLLH----------------HHHHHHHHleEEEEE DSSP EEELLlllllLEEEEEEELlLLHH-HHHHHHHHLlllLLEEEEeeeeeeelLEEEEEEEE Query ALWHDkqghlSHYMVLIQRsGLSK-LLEPLLFAAtsdSQLSKTeissikinSETVPVYQL 177 ident | | | Sbjct AFFAR----sKEFRLFGSG-SYPYaFTNLIFSRS---DGWAST------ktEHGITYYES 104 DSSP EEELL----lLEEEEEEEE-LLLHhHHHHHHHHL---LLLEEE------elLLLLEEEEL DSSP EellleEEEEEEEL-LEEEEELL-hHHLEelleelhhhHHHHHHHhllLLLHhhHLLL-- Query RyngnnALMFATYQ-DKMLVFSS-tDMLFkddqqdteaTAIAGDLlsgKKRWqaSFGL-- 233 ident | | | Sbjct E-----HTDVSIPApHFSCVIFGssKRER--------mSKMLSRL-vnPDRP--QLPPrf 148 DSSP L-----LEEEEEEElLEEEEEEEllLLLL--------hHHHHHLL-llLLLL--LLLHhh DSSP -LLLLLllLLLLEEEEEEH--HHHLLL--hhHHLLLEEEEEEEELL----LLEEEEEEEl Query -EERTAekTPVRQRIVVSA--RWLGFG--yqRLMPSFAGVRFEMGN----DGWHSFVALn 284 ident | | | | | Sbjct eKECTSegTSQTVALYIKNggHFITKLlnfpQLNLPLGAMELYLTArrneYLYTLSLQL- 207 DSSP hHHHLLllLLLLEEEEELLlhHHHLLLllllLLLLLLLLEEEEEEEelleEEEEEEEEL- DSSP lhhhhlllllllhhhhhhlllleeeeeeeellllhhhhhhhlllllhhhlllleeeeeee Query desasvdasfdftpvwnsmpagasfcvavpyshgiaeemlshisqendklngaldgaagl 344 ident Sbjct ------------------------------------------------------------ 207 DSSP ------------------------------------------------------------ DSSP eeelllllllleeeeeelllllhhhhhhhhhhhhllllllllllllllleeeeelleeee Query cwyedsklqtplfvgqfdgtaeqaqlpgklftqnigaheskapegvlpvsqtqqgeaqiw 404 ident Sbjct ------------------------------------------------------------ 207 DSSP ------------------------------------------------------------ DSSP eeeeellllleehhhlllhhhlllleeeeeeeeeelleeeeellhhhhhhhhhhhlllll Query rrevssrygqypkaqaaqpdqlmsdyffrvslamqnktllfslddtlvnnalqtlnktrp 464 ident Sbjct ------------------------------------------------------------ 207 DSSP ------------------------------------------------------------ DSSP lhhhllLLLLeeeeeelhhhhhhhhhhhhhhhllllllhhhhhhhhhhlhhhhhhhhllL Query amvdviPTDGivplyinpqgiakllrnetltslpknlepvfynaaqtllmpkldalsqqP 524 ident Sbjct ------FPIQ---------------------------------------------flisR 216 DSSP ------LHHH---------------------------------------------hhhhH DSSP LEEeEELLLLLlllleeEEELL-------------- Query RYVmKLAQMEPgaawqwLPITW-------------- 546 ident | | Sbjct VLNaHIHVEGD-----rLIIEDgtisaerlasviss 247 DSSP HLLlLLEELLL-----eEEEEEeeeehhhhhhhhll
