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<TITLE>Dali: PF09892</TITLE><A name=s001A>
<h1>Results: PF09892</h1>
<h2>Query: <a name="s001A">s001A</a></h2>
                                                                      
<P><A NAME="summary">
Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. 
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, 
 and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure. 

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<input TYPE="hidden" NAME="jobid" VALUE=PF09892>
<input TYPE="hidden" NAME="query_sequence" VALUE="GNGVKKLFIGGLHGNEGKFTEIILKDFVNSLKECNYIGDIVVIPKLVENSKYISTLSEKYYESDEGKTLINIIKKYKPKVYFELHAYKKENYKKLTSNNRKKVPPLIDIGNNVLIASISPILRKRFSKEDFCMTIEIPSWKVYEVKDEILKILKIGAESLRREEIIEKLKKIYPEHIEKAEYFSKKYNL"> 
<input TYPE="hidden" NAME="query_dssp" VALUE="LLLLEEEEEELLLLLLHHHHHHHHHHHHHHHHHLLLLLEEEEELLLLLLLLLLLLLLHHHHHLHHHHHHHHHHHHHLLLEEEEEEEELHHHHHHHHLLLLLLLLLLEELLLLLEEEELLHHHHLLLLLLLEEEEEEEELLLHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHLHHHHHHHHHHHHHLLL"> 
<input TYPE="hidden" NAME="cd1" VALUE=s001A>
<input TYPE="hidden" NAME="pdbresnos" VALUE="189   11    12    13    14    15    16    17    18    19    20    21    22    23    24    25    26    27    28    29    30    31    32    33    34    35    36    37    38    39    40    41    42    43    44    45    46    47    48    49    50    51    52    53    54    55    56    57    58    59    60    61    62    63    64    65    66    67    68    69    70    71    72    73    74    75    76    77    78    79    80    81    82    83    84    85    86    87    88    89    90    91    92    93    94    95    96    97    98    99   100   101   102   103   104   105   106   107   108   109   110   111   112   113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   193   194   195   196   197   198   199 
">
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<INPUT TYPE="CHECKBOX" NAME="expand_gaps" VALUE=1 CHECKED /> Expand gaps 
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<h2>Summary</h2>
<PRE>
    No:  Chain   Z    rmsd lali nres  %id PDB  Description
<INPUT TYPE="CHECKBOX" NAME="cd2list" VALUE="cd2=3cdxF sequence=sriacdidfdrdgrqagyaraplsrnnsgwgtveipitvvknGSGPTVLLTGGVHGDEYEGQIAISDLARRLRPEEVQGRVIMLPAVNMPAiqsdtrlspvdgRDINRCFPGdprgtfsQMLAHFLDsVILPMADISVDMHTAGHSYDsTPSTNMhyldpalrartlaaaeafgaphnvvstfTSCVERRGIVSLGTELGGwgRVNIEGVRIGKRGILNVLKHMGviegtPETAQrggaaGTRHMMVReadayvmaprtglfepthyvgeevrtgetagwihfvedvdtaplellyrrdgivwfgagpgrvtrgdavavvmedyNDTW dssp=lllllllllllleeeeeeeeeeeeelleeeeeeeeeeeeeeeLLLLEEEEELLLLLLLLHHHHHHHHHHHHLLHHHLLEEEEEELLLLHHHhhhlllllllllLLHHHLLLLlllllhhHHHHHHHHhLLHHHLLEEEELLLLLLLEEeLLEEELllllhhhhhhhhhhhhhhllleeelllhHHHHHHLLLEEEEEELLLllLLLHHHHHHHHHHHHHHHHHLLlllllLLLLLlllllLLEEEELLlhhheeelllleeeeelllllleelllleeeeeellllllllleeeelllleeeeeeellleelllleeeeeeeelLLLL qstarts=0,17,51,58,62,70,76,111,118,129,139,167,172,178,184 sstarts=42,58,103,108,119,128,132,149,183,191,203,230,240,244,324 lengths=16,33,5,4,8,4,16,6,8,10,22,5,4,4,4 u=-0.098314,0.244728,0.964595,-0.531582,0.806501,-0.258798,-0.841282,-0.538205,0.050802 t=-37,-41,-41 segments=50-65,66-98,111-115,116-119,127-134,136-139,140-155,157-162,199-206,207-216,219-240,246-250,256-259,260-263,340-343 compnd=_SUCCINYLGLUTAMATEDESUCCINYLASE/ASPARTOACYLASE;>"   <A HREF=#alignment-1>1</A>:  3cdx-F 10.6  3.4  149   328   13 <A HREF="http://ekhidna2.biocenter.helsinki.fi/cgi-bin/daliviewer/readpdb.cgi?html=1&jobid=pdb&pdbid=3cdx&u=-0.098314,0.244728,0.964595,-0.531582,0.806501,-0.258798,-0.841282,-0.538205,0.050802&t=-37,-41,-41">PDB</A>  MOLECULE: SUCCINYLGLUTAMATEDESUCCINYLASE/ASPARTOACYLASE;             

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</PRE>
<A NAME="alignments">
<h2>Pairwise Structural Alignments </h2>
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
<a name=alignment-1><h3> No 1: Query=s001A Sbjct=3cdxF Z-score=10.6</h3>

<A HREF="#s001A">back to top</A>
<PRE>
DSSP  ------------------------------------------LLLLEEEEEELLLLLLhH
Query ------------------------------------------GNGVKKLFIGGLHGNEgK   18
ident                                           | |   |  || || |  
Sbjct sriacdidfdrdgrqagyaraplsrnnsgwgtveipitvvknGSGPTVLLTGGVHGDE-Y   59
DSSP  lllllllllllleeeeeeeeeeeeelleeeeeeeeeeeeeeeLLLLEEEEELLLLLLL-L


DSSP  HHHHHHHHHHHHHHHLLLLLEEEEELLLLLLL-----------lLLLLLlhHHHH-----
Query FTEIILKDFVNSLKECNYIGDIVVIPKLVENS-----------kYISTLseKYYE-----   62
ident    |   |    |      |     |                                  
Sbjct EGQIAISDLARRLRPEEVQGRVIMLPAVNMPAiqsdtrlspvdgRDINR--CFPGdprgt  117
DSSP  HHHHHHHHHHHHLLHHHLLEEEEEELLLLHHHhhhlllllllllLLHHH--LLLLlllll


DSSP  --LHHHHHHH-HHHHhhLLLEEEEEEEELHHHHhhhhlllllllllleelllLLEEEE--
Query --SDEGKTLI-NIIKkyKPKVYFELHAYKKENYkkltsnnrkkvpplidignNVLIAS--  117
ident         |   |            |                                  
Sbjct fsQMLAHFLDsVILP--MADISVDMHTAGHSYD------------------sTPSTNMhy  157
DSSP  hhHHHHHHHHhLLHH--HLLEEEELLLLLLLEE------------------eLLEEELll


DSSP  -------------------------lLHHHHLLLlllLEEEEEEEEL--LLHHHHHHHHH
Query -------------------------iSPILRKRFskeDFCMTIEIPS--WKVYEVKDEIL  150
ident                                 |          |         |      
Sbjct ldpalrartlaaaeafgaphnvvstfTSCVERRG---IVSLGTELGGwgRVNIEGVRIGK  214
DSSP  llhhhhhhhhhhhhhhllleeelllhHHHHHHLL---LEEEEEELLLllLLLHHHHHHHH


DSSP  HHHHHHHHLLLhhhhhhHHHHH-----LHHHhhHHHH-----------------------
Query KILKIGAESLRreeiieKLKKI-----YPEHieKAEY-----------------------  182
ident                               |                             
Sbjct RGILNVLKHMG-viegtPETAQrggaaGTRH--MMVReadayvmaprtglfepthyvgee  271
DSSP  HHHHHHHHHLL-lllllLLLLLlllllLLEE--EELLlhhheeelllleeeeelllllle


DSSP  ---------------------------------------------------hhHHLLl
Query ---------------------------------------------------fsKKYNl  189
ident                                                           
Sbjct vrtgetagwihfvedvdtaplellyrrdgivwfgagpgrvtrgdavavvmedyNDTW-  328
DSSP  elllleeeeeellllllllleeeelllleeeeeeellleelllleeeeeeeelLLLL-


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<H1>PF09892</H1>
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